Literature DB >> 19919573

The PPR protein encoded by the LOVASTATIN INSENSITIVE 1 gene is involved in RNA editing at three sites in mitochondria of Arabidopsis thaliana.

Daniil Verbitskiy1, Anja Zehrmann, Johannes A van der Merwe, Axel Brennicke, Mizuki Takenaka.   

Abstract

Post-transcriptional RNA editing in flowering plant mitochondria alters several hundred nucleotides from cytidine to uridine, mostly in mRNAs. To characterize the factors involved in RNA editing in plant mitochondria, we initiated a screen for nuclear mutants defective in RNA editing at specific sites. Here we identify the nuclear-encoded gene MEF11, which is involved in RNA editing of the three sites cox3-422, nad4-124 and ccb203-344 in Arabidopsis thaliana. A T-DNA insertion line of this gene was previously characterized as showing enhanced tolerance to the compound lovastatin, an inhibitor of the mevalonate pathway of isoprenoid biosynthesis. The mef11-1 mutant described here shows similar tolerance to lovastatin. Identification of the function of the MEF11 protein in site-specific mitochondrial RNA editing suggests indirect effects of retrograde signalling from mitochondria to the cytoplasm to evoke alteration of the mevalonate pathway. The editing sites cox3-422 and ccb203-344 each alter amino acids that are conserved in the respective proteins, while the nad4-124 site is silent. The single amino acid change in the mef11-1 mutant occurs in the second pentatricopeptide repeat, suggesting that this motif is required for site-specific RNA editing.

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Year:  2009        PMID: 19919573     DOI: 10.1111/j.1365-313X.2009.04076.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  31 in total

1.  Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Axel Brennicke
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

Review 2.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

3.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

4.  PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

Authors:  Davide Sosso; Sylvie Mbelo; Vanessa Vernoud; Ghislaine Gendrot; Annick Dedieu; Pierre Chambrier; Myriam Dauzat; Laure Heurtevin; Virginie Guyon; Mizuki Takenaka; Peter M Rogowsky
Journal:  Plant Cell       Date:  2012-02-07       Impact factor: 11.277

5.  Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts.

Authors:  Stéphane Bentolila; Walter Knight; Maureen Hanson
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

6.  The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.

Authors:  Barbara Härtel; Anja Zehrmann; Daniil Verbitskiy; Mizuki Takenaka
Journal:  RNA Biol       Date:  2013-06-20       Impact factor: 4.652

7.  Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria.

Authors:  Stéphane Bentolila; Arianne M Babina; Arnaud Germain; Maureen R Hanson
Journal:  RNA Biol       Date:  2013-06-18       Impact factor: 4.652

8.  Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature.

Authors:  Henning Lenz; Mareike Rüdinger; Ute Volkmar; Simon Fischer; Stefan Herres; Felix Grewe; Volker Knoop
Journal:  Curr Genet       Date:  2009-12-30       Impact factor: 3.886

9.  Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Authors:  Mizuki Takenaka; Axel Brennicke
Journal:  Nat Protoc       Date:  2012-10-04       Impact factor: 13.491

10.  MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis.

Authors:  Mizuki Takenaka
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

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