Literature DB >> 19453459

Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.

Sung-Ryul Kim1, Jung-Il Yang, Sunok Moon, Choong-Hwan Ryu, Kyungsook An, Kyung-Me Kim, Jieun Yim, Gynheung An.   

Abstract

RNA editing is the alteration of RNA sequences via insertion, deletion and conversion of nucleotides. In flowering plants, specific cytidine residues of RNA transcribed from organellar genomes are converted into uridines. Approximately 35 editing sites are present in the chloroplasts of higher plants; six pentatricopeptide repeat genes involved in RNA editing have been identified in Arabidopsis. However, although approximately 500 editing sites are found in mitochondrial RNAs of flowering plants, only one gene in Arabidopsis has been reported to be involved in such editing. Here, we identified rice mutants that are defective in seven specific RNA editing sites on five mitochondrial transcripts. Their various phenotypes include delayed seed germination, retarded growth, dwarfism and sterility. Mutant seeds from heterozygous plants are opaque. This mutation, named opaque and growth retardation 1 (ogr1), was generated by T-DNA insertion into a gene that encodes a pentatricopeptide repeat protein containing the DYW motif. The OGR1-sGFP fusion protein is localized to mitochondria. Ectopic expression of OGR1 in the mutant complements the altered phenotypes. We conclude that OGR1 is essential for RNA editing in rice mitochondria and is required for normal growth and development.

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Year:  2009        PMID: 19453459     DOI: 10.1111/j.1365-313X.2009.03909.x

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  53 in total

Review 1.  Biological significance of RNA editing in cells.

Authors:  Wei Tang; Yongjun Fei; Michael Page
Journal:  Mol Biotechnol       Date:  2012-09       Impact factor: 2.695

2.  Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Authors:  Mizuki Takenaka; Daniil Verbitskiy; Anja Zehrmann; Axel Brennicke
Journal:  J Biol Chem       Date:  2010-06-21       Impact factor: 5.157

Review 3.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

4.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

5.  PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

Authors:  Davide Sosso; Sylvie Mbelo; Vanessa Vernoud; Ghislaine Gendrot; Annick Dedieu; Pierre Chambrier; Myriam Dauzat; Laure Heurtevin; Virginie Guyon; Mizuki Takenaka; Peter M Rogowsky
Journal:  Plant Cell       Date:  2012-02-07       Impact factor: 11.277

6.  Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts.

Authors:  Stéphane Bentolila; Walter Knight; Maureen Hanson
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

7.  The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.

Authors:  Barbara Härtel; Anja Zehrmann; Daniil Verbitskiy; Mizuki Takenaka
Journal:  RNA Biol       Date:  2013-06-20       Impact factor: 4.652

8.  Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria.

Authors:  Stéphane Bentolila; Arianne M Babina; Arnaud Germain; Maureen R Hanson
Journal:  RNA Biol       Date:  2013-06-18       Impact factor: 4.652

9.  Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature.

Authors:  Henning Lenz; Mareike Rüdinger; Ute Volkmar; Simon Fischer; Stefan Herres; Felix Grewe; Volker Knoop
Journal:  Curr Genet       Date:  2009-12-30       Impact factor: 3.886

10.  MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis.

Authors:  Mizuki Takenaka
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

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