Literature DB >> 20566637

Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana.

Mizuki Takenaka1, Daniil Verbitskiy, Anja Zehrmann, Axel Brennicke.   

Abstract

RNA editing in flowering plant mitochondria post-transcriptionally alters several hundred nucleotides from C to U, mostly in mRNAs. Several factors required for specific RNA-editing events in plant mitochondria and plastids have been identified, all of them PPR proteins of the PLS subclass with a C-terminal E-domain and about half also with an additional DYW domain. Based on this information, we here probe the connection between E-PPR proteins and RNA editing in plant mitochondria. We initiated a reverse genetics screen of T-DNA insertion lines in Arabidopsis thaliana and investigated 58 of the 150 E-PPR-coding genes for a function in RNA editing. Six genes were identified to be involved in mitochondrial RNA editing at specific sites. Homozygous mutants of the five genes MEF18-MEF22 display no gross disturbance in their growth or development patterns, suggesting that the editing sites affected are not crucial at least in the greenhouse. These results show that a considerable percentage of the E-PPR proteins are involved in the functional processing of site-specific RNA editing in plant mitochondria.

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Year:  2010        PMID: 20566637      PMCID: PMC2930711          DOI: 10.1074/jbc.M110.128611

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  50 in total

1.  The PPR motif - a TPR-related motif prevalent in plant organellar proteins.

Authors:  I D Small; N Peeters
Journal:  Trends Biochem Sci       Date:  2000-02       Impact factor: 13.807

2.  Cross-competition in transgenic chloroplasts expressing single editing sites reveals shared cis elements.

Authors:  Anne-Laure Chateigner-Boutin; Maureen R Hanson
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

3.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

4.  CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts.

Authors:  Anne-Laure Chateigner-Boutin; Maricela Ramos-Vega; Arturo Guevara-García; Charles Andrés; María de la Luz Gutiérrez-Nava; Araceli Cantero; Etienne Delannoy; Luis Felipe Jiménez; Claire Lurin; Ian Small; Patricia León
Journal:  Plant J       Date:  2008-08-23       Impact factor: 6.417

Review 5.  Pentatricopeptide repeat proteins: a socket set for organelle gene expression.

Authors:  Christian Schmitz-Linneweber; Ian Small
Journal:  Trends Plant Sci       Date:  2008-11-12       Impact factor: 18.313

6.  RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Authors:  P Giegé; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

7.  The involvement of a PPR protein of the P subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript.

Authors:  Yoko Doniwa; Minoru Ueda; Masami Ueta; Akira Wada; Koh-ichi Kadowaki; Nobuhiro Tsutsumi
Journal:  Gene       Date:  2010-02-01       Impact factor: 3.688

8.  cis Recognition elements in plant mitochondrion RNA editing.

Authors:  J C Farré; G Leon; X Jordana; A Araya
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

9.  The pentatricopeptide repeat protein PPR5 stabilizes a specific tRNA precursor in maize chloroplasts.

Authors:  Susanne Beick; Christian Schmitz-Linneweber; Rosalind Williams-Carrier; Bryan Jensen; Alice Barkan
Journal:  Mol Cell Biol       Date:  2008-06-30       Impact factor: 4.272

10.  The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana.

Authors:  Hirokazu Handa
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

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  31 in total

1.  Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants.

Authors:  Mizuki Takenaka; Anja Zehrmann; Daniil Verbitskiy; Matthias Kugelmann; Barbara Härtel; Axel Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

2.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

3.  PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth.

Authors:  Davide Sosso; Sylvie Mbelo; Vanessa Vernoud; Ghislaine Gendrot; Annick Dedieu; Pierre Chambrier; Myriam Dauzat; Laure Heurtevin; Virginie Guyon; Mizuki Takenaka; Peter M Rogowsky
Journal:  Plant Cell       Date:  2012-02-07       Impact factor: 11.277

4.  Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts.

Authors:  Stéphane Bentolila; Walter Knight; Maureen Hanson
Journal:  Plant Physiol       Date:  2010-10-25       Impact factor: 8.340

5.  The longest mitochondrial RNA editing PPR protein MEF12 in Arabidopsis thaliana requires the full-length E domain.

Authors:  Barbara Härtel; Anja Zehrmann; Daniil Verbitskiy; Mizuki Takenaka
Journal:  RNA Biol       Date:  2013-06-20       Impact factor: 4.652

6.  Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.

Authors:  Michael L Hayes; Karolyn Giang; Beniam Berhane; R Michael Mulligan
Journal:  J Biol Chem       Date:  2013-11-05       Impact factor: 5.157

7.  Insights into the composition and assembly of the membrane arm of plant complex I through analysis of subcomplexes in Arabidopsis mutant lines.

Authors:  Etienne H Meyer; Cory Solheim; Sandra K Tanz; Géraldine Bonnard; A Harvey Millar
Journal:  J Biol Chem       Date:  2011-05-23       Impact factor: 5.157

8.  Selective homo- and heteromer interactions between the multiple organellar RNA editing factor (MORF) proteins in Arabidopsis thaliana.

Authors:  Anja Zehrmann; Barbara Härtel; Franziska Glass; Eszter Bayer-Császár; Toshihiro Obata; Etienne Meyer; Axel Brennicke; Mizuki Takenaka
Journal:  J Biol Chem       Date:  2015-01-12       Impact factor: 5.157

9.  Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Authors:  Mizuki Takenaka; Axel Brennicke
Journal:  Nat Protoc       Date:  2012-10-04       Impact factor: 13.491

10.  RNA Recognition Motif-Containing Protein ORRM4 Broadly Affects Mitochondrial RNA Editing and Impacts Plant Development and Flowering.

Authors:  Xiaowen Shi; Arnaud Germain; Maureen R Hanson; Stéphane Bentolila
Journal:  Plant Physiol       Date:  2015-11-17       Impact factor: 8.340

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