Literature DB >> 18631156

Higher-throughput approaches to crystallization and crystal structure determination.

Mark J Fogg1, Anthony J Wilkinson.   

Abstract

In recent times, there has been a large increase in the number of protein structures deposited in the Protein Data Bank. Structural genomics initiatives have contributed to this expansion through their focus on high-throughput structural determination. This has fuelled advances in many of the techniques in the pipeline from gene to protein to crystal to structure. These include ligation-independent cloning methods, parallel purification systems, robotic crystallization devices and automated methods of crystal identification, data collection and, in some cases, structure solution. Some of these advances are described and discussed briefly with an emphasis on activities in the York Structural Biology Laboratory through its participation in the Structural Proteomics in Europe consortium.

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Year:  2008        PMID: 18631156     DOI: 10.1042/BST0360771

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  31 in total

1.  Structure and kinetic investigation of Streptococcus pyogenes family GH38 alpha-mannosidase.

Authors:  Michael D L Suits; Yanping Zhu; Edward J Taylor; Julia Walton; David L Zechel; Harry J Gilbert; Gideon J Davies
Journal:  PLoS One       Date:  2010-02-03       Impact factor: 3.240

2.  Structures of adenosine kinase from Trypanosoma brucei brucei.

Authors:  Jennifer Timm; Dolores González-Pacanowska; Keith S Wilson
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

3.  A microfluidic approach for protein structure determination at room temperature via on-chip anomalous diffraction.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Amrit Bhaskarla; Vinayak Agarwal; Satish K Nair; Paul J A Kenis
Journal:  Lab Chip       Date:  2013-07-05       Impact factor: 6.799

4.  The crystal structure of the Leishmania major deoxyuridine triphosphate nucleotidohydrolase in complex with nucleotide analogues, dUMP, and deoxyuridine.

Authors:  Glyn R Hemsworth; Olga V Moroz; Mark J Fogg; Benjamin Scott; Cristina Bosch-Navarrete; Dolores González-Pacanowska; Keith S Wilson
Journal:  J Biol Chem       Date:  2011-03-15       Impact factor: 5.157

5.  Expression of soluble, active fragments of the morphogenetic protein SpoIIE from Bacillus subtilis using a library-based construct screen.

Authors:  Andrea E Rawlings; Vladimir M Levdikov; Elena Blagova; Vicki L Colledge; Philippe J Mas; James Tunaley; Ludmila Vavrova; Keith S Wilson; Imrich Barak; Darren J Hart; Anthony J Wilkinson
Journal:  Protein Eng Des Sel       Date:  2010-09-03       Impact factor: 1.650

6.  The structure of Rph, an exoribonuclease from Bacillus anthracis, at 1.7 A resolution.

Authors:  Andrea E Rawlings; Elena V Blagova; Vladimir M Levdikov; Mark J Fogg; Keith S Wilson; Anthony J Wilkinson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-12-25

7.  Conserved asymmetry underpins homodimerization of Dicer-associated double-stranded RNA-binding proteins.

Authors:  Alex Heyam; Claire E Coupland; Clément Dégut; Ruth A Haley; Nicola J Baxter; Leonhard Jakob; Pedro M Aguiar; Gunter Meister; Michael P Williamson; Dimitris Lagos; Michael J Plevin
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

8.  Structure of the phosphatase domain of the cell fate determinant SpoIIE from Bacillus subtilis.

Authors:  Vladimir M Levdikov; Elena V Blagova; Andrea E Rawlings; Katie Jameson; James Tunaley; Darren J Hart; Imrich Barak; Anthony J Wilkinson
Journal:  J Mol Biol       Date:  2011-11-15       Impact factor: 5.469

9.  Structure and activity of a novel archaeal β-CASP protein with N-terminal KH domains.

Authors:  Ana P G Silva; Maria Chechik; Robert T Byrne; David G Waterman; C Leong Ng; Eleanor J Dodson; Eugene V Koonin; Alfred A Antson; Callum Smits
Journal:  Structure       Date:  2011-05-11       Impact factor: 5.006

10.  Structural rearrangement accompanying ligand binding in the GAF domain of CodY from Bacillus subtilis.

Authors:  Vladimir M Levdikov; Elena Blagova; Vicki L Colledge; Andrey A Lebedev; David C Williamson; Abraham L Sonenshein; Anthony J Wilkinson
Journal:  J Mol Biol       Date:  2009-06-03       Impact factor: 5.469

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