Literature DB >> 26524303

In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Karolina Michalska1, Kemin Tan1, Changsoo Chang1, Hui Li1, Catherine Hatzos-Skintges1, Michael Molitsky2, Randy Alkire2, Andrzej Joachimiak1.   

Abstract

A prototype of a 96-well plate scanner for in situ data collection has been developed at the Structural Biology Center (SBC) beamline 19-ID, located at the Advanced Photon Source, USA. The applicability of this instrument for protein crystal diffraction screening and data collection at ambient temperature has been demonstrated. Several different protein crystals, including selenium-labeled, were used for data collection and successful SAD phasing. Without the common procedure of crystal handling and subsequent cryo-cooling for data collection at T = 100 K, crystals in a crystallization buffer show remarkably low mosaicity (<0.1°) until deterioration by radiation damage occurs. Data presented here show that cryo-cooling can cause some unexpected structural changes. Based on the results of this study, the integration of the plate scanner into the 19-ID end-station with automated controls is being prepared. With improvement of hardware and software, in situ data collection will become available for the SBC user program including remote access.

Entities:  

Keywords:  crystallization plate; in situ; synchrotron data collection

Mesh:

Substances:

Year:  2015        PMID: 26524303      PMCID: PMC4629866          DOI: 10.1107/S1600577515016598

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  48 in total

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3.  Changes to crystals of Escherichia coli beta-galactosidase during room-temperature/low-temperature cycling and their relation to cryo-annealing.

Authors:  Douglas H Juers; Jeffrey Lovelace; Henry D Bellamy; Edward H Snell; Brian W Matthews; Gloria E O Borgstahl
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-10-17

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Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

5.  A high-pressure cryocooling method for protein crystals and biological samples with reduced background X-ray scatter.

Authors:  Chae Un Kim; Jennifer L Wierman; Richard Gillilan; Enju Lima; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2012-12-21       Impact factor: 3.304

6.  A microfluidic approach for protein structure determination at room temperature via on-chip anomalous diffraction.

Authors:  Sarah L Perry; Sudipto Guha; Ashtamurthy S Pawate; Amrit Bhaskarla; Vinayak Agarwal; Satish K Nair; Paul J A Kenis
Journal:  Lab Chip       Date:  2013-07-05       Impact factor: 6.799

7.  Crystallization and preliminary X-ray analysis of the dsDNA bacteriophage HK97 mature empty capsid.

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Journal:  Virology       Date:  1998-03-30       Impact factor: 3.616

8.  Crystal cryocooling distorts conformational heterogeneity in a model Michaelis complex of DHFR.

Authors:  Daniel A Keedy; Henry van den Bedem; David A Sivak; Gregory A Petsko; Dagmar Ringe; Mark A Wilson; James S Fraser
Journal:  Structure       Date:  2014-05-29       Impact factor: 5.006

9.  X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

Authors:  Gera Kisselman; Wei Qiu; Vladimir Romanov; Christine M Thompson; Robert Lam; Kevin P Battaile; Emil F Pai; Nickolay Y Chirgadze
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-05-12

Review 10.  Application of in situ diffraction in high-throughput structure determination platforms.

Authors:  Pierre Aller; Juan Sanchez-Weatherby; James Foadi; Graeme Winter; Carina M C Lobley; Danny Axford; Alun W Ashton; Domenico Bellini; Jose Brandao-Neto; Simone Culurgioni; Alice Douangamath; Ramona Duman; Gwyndaf Evans; Stuart Fisher; Ralf Flaig; David R Hall; Petra Lukacik; Marco Mazzorana; Katherine E McAuley; Vitaliy Mykhaylyk; Robin L Owen; Neil G Paterson; Pierpaolo Romano; James Sandy; Thomas Sorensen; Frank von Delft; Armin Wagner; Anna Warren; Mark Williams; David I Stuart; Martin A Walsh
Journal:  Methods Mol Biol       Date:  2015
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  3 in total

1.  In situ crystal data-collection and ligand-screening system at SPring-8.

Authors:  Hideo Okumura; Naoki Sakai; Hironori Murakami; Nobuhiro Mizuno; Yuki Nakamura; Go Ueno; Takuya Masunaga; Takashi Kawamura; Seiki Baba; Kazuya Hasegawa; Masaki Yamamoto; Takashi Kumasaka
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-05-27       Impact factor: 1.072

2.  Novel combined crystallization plate for high-throughput crystal screening and in situ data collection at a crystallography beamline.

Authors:  Miao Liang; Li Yu; Zhijun Wang; Huan Zhou; Yi Zhang; Qisheng Wang; Jianhua He
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-08-24       Impact factor: 1.072

3.  ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.

Authors:  Andrew A McCarthy; Ray Barrett; Antonia Beteva; Hugo Caserotto; Fabien Dobias; Franck Felisaz; Thierry Giraud; Matias Guijarro; Robert Janocha; Akim Khadrouche; Mario Lentini; Gordon A Leonard; Marcos Lopez Marrero; Stephanie Malbet-Monaco; Sean McSweeney; Didier Nurizzo; Gergely Papp; Christopher Rossi; Jeremy Sinoir; Clement Sorez; John Surr; Olof Svensson; Ulrich Zander; Florent Cipriani; Pascal Theveneau; Christoph Mueller-Dieckmann
Journal:  J Synchrotron Radiat       Date:  2018-06-27       Impact factor: 2.616

  3 in total

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