Literature DB >> 23812720

Elongation factor G bound to the ribosome in an intermediate state of translocation.

David S Tourigny1, Israel S Fernández, Ann C Kelley, V Ramakrishnan.   

Abstract

A key step of translation by the ribosome is translocation, which involves the movement of messenger RNA (mRNA) and transfer RNA (tRNA) with respect to the ribosome. This allows a new round of protein chain elongation by placing the next mRNA codon in the A site of the 30S subunit. Translocation proceeds through an intermediate state in which the acceptor ends of the tRNAs have moved with respect to the 50S subunit but not the 30S subunit, to form hybrid states. The guanosine triphosphatase (GTPase) elongation factor G (EF-G) catalyzes the subsequent movement of mRNA and tRNA with respect to the 30S subunit. Here, we present a crystal structure at 3 angstrom resolution of the Thermus thermophilus ribosome with a tRNA in the hybrid P/E state bound to EF-G with a GTP analog. The structure provides insights into structural changes that facilitate translocation and suggests a common GTPase mechanism for EF-G and elongation factor Tu.

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Year:  2013        PMID: 23812720      PMCID: PMC3836249          DOI: 10.1126/science.1235490

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  48 in total

1.  Domain III of elongation factor G from Thermus thermophilus is essential for induction of GTP hydrolysis on the ribosome.

Authors:  K A Martemyanov; A T Gudkov
Journal:  J Biol Chem       Date:  2000-11-17       Impact factor: 5.157

2.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

3.  Spontaneous formation of the unlocked state of the ribosome is a multistep process.

Authors:  James B Munro; Roger B Altman; Chang-Shung Tung; Jamie H D Cate; Kevin Y Sanbonmatsu; Scott C Blanchard
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

4.  Molecular replacement with MOLREP.

Authors:  Alexei Vagin; Alexei Teplyakov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

5.  Crystal structure of a mutant elongation factor G trapped with a GTP analogue.

Authors:  Sebastian Hansson; Ranvir Singh; Anatoly T Gudkov; Anders Liljas; Derek T Logan
Journal:  FEBS Lett       Date:  2005-08-15       Impact factor: 4.124

6.  Single-molecule fluorescence measurements of ribosomal translocation dynamics.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskarin Kaur; Diana Cabral; Hanqing Liu; Yuhong Wang; Haibo Zhang; Gabriel Rosenblum; Zeev Smilansky; Yale E Goldman; Barry S Cooperman
Journal:  Mol Cell       Date:  2011-05-06       Impact factor: 17.970

7.  Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.

Authors:  Jack A Dunkle; Leyi Wang; Michael B Feldman; Arto Pulk; Vincent B Chen; Gary J Kapral; Jonas Noeske; Jane S Richardson; Scott C Blanchard; Jamie H Doudna Cate
Journal:  Science       Date:  2011-05-20       Impact factor: 47.728

8.  Structure of the 70S ribosome complexed with mRNA and tRNA.

Authors:  Maria Selmer; Christine M Dunham; Frank V Murphy; Albert Weixlbaumer; Sabine Petry; Ann C Kelley; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2006-09-07       Impact factor: 47.728

9.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  119 in total

1.  Centers of motion associated with EF-Tu binding to the ribosome.

Authors:  Maxim Paci; George E Fox
Journal:  RNA Biol       Date:  2016-01-19       Impact factor: 4.652

2.  eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining.

Authors:  Bernhard Kuhle; Ralf Ficner
Journal:  EMBO J       Date:  2014-03-31       Impact factor: 11.598

3.  Heterologous Inferential Analysis (HIA) and Other Emerging Concepts: In Understanding Mitochondrial Variation In Pathogenesis: There is no More Low-Hanging Fruit.

Authors:  Antón Vila-Sanjurjo; Paul M Smith; Joanna L Elson
Journal:  Methods Mol Biol       Date:  2021

Review 4.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

5.  Structure of EF-G-ribosome complex in a pretranslocation state.

Authors:  Yun Chen; Shu Feng; Veerendra Kumar; Rya Ero; Yong-Gui Gao
Journal:  Nat Struct Mol Biol       Date:  2013-08-04       Impact factor: 15.369

6.  The ribosome moves: RNA mechanics and translocation.

Authors:  Harry F Noller; Laura Lancaster; Jie Zhou; Srividya Mohan
Journal:  Nat Struct Mol Biol       Date:  2017-12-07       Impact factor: 15.369

7.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

8.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

9.  Quantitative exploration of the molecular origin of the activation of GTPase.

Authors:  Ram Prasad B; Nikolay V Plotnikov; Jeronimo Lameira; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-26       Impact factor: 11.205

10.  Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding.

Authors:  Robb Welty; Kathleen B Hall
Journal:  J Mol Biol       Date:  2016-09-29       Impact factor: 5.469

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