Literature DB >> 23912278

Structure of EF-G-ribosome complex in a pretranslocation state.

Yun Chen1, Shu Feng, Veerendra Kumar, Rya Ero, Yong-Gui Gao.   

Abstract

In protein synthesis, elongation factor G (EF-G) facilitates movement of tRNA-mRNA by one codon, which is coupled to the ratchet-like rotation of the ribosome complex and is triggered by EF-G-mediated GTP hydrolysis. Here we report the structure of a pretranslocational ribosome bound to Thermus thermophilus EF-G trapped with a GTP analog. The positioning of the catalytic His87 into the active site coupled to hydrophobic-gate opening involves the 23S rRNA sarcin-ricin loop and domain III of EF-G and provides a structural basis for the GTPase activation of EF-G. Interactions of the hybrid peptidyl-site-exit-site tRNA with ribosomal elements, including the entire L1 stalk and proteins S13 and S19, shed light on how formation and stabilization of the hybrid tRNA is coupled to head swiveling and body rotation of the 30S as well as to closure of the L1 stalk.

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Year:  2013        PMID: 23912278     DOI: 10.1038/nsmb.2645

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  49 in total

Review 1.  Regulation of GTPases in the bacterial translation machinery.

Authors:  M Sprinzl; S Brock; Y Huang; P Milovnik; M Nanninga; M Nesper-Brock; H Rütthard; K Szkaradkiewicz
Journal:  Biol Chem       Date:  2000 May-Jun       Impact factor: 3.915

2.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

Authors:  Nina Clementi; Anna Chirkova; Barbara Puffer; Ronald Micura; Norbert Polacek
Journal:  Nat Chem Biol       Date:  2010-03-28       Impact factor: 15.040

3.  Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors.

Authors:  T P Hausner; J Atmadja; K H Nierhaus
Journal:  Biochimie       Date:  1987-09       Impact factor: 4.079

4.  Energetics of activation of GTP hydrolysis on the ribosome.

Authors:  Göran Wallin; Shina C L Kamerlin; Johan Aqvist
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy.

Authors:  Jayati Sengupta; Jakob Nilsson; Richard Gursky; Morten Kjeldgaard; Poul Nissen; Joachim Frank
Journal:  J Mol Biol       Date:  2008-07-11       Impact factor: 5.469

6.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2010-11-05       Impact factor: 47.728

7.  Binding of the 3' terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation.

Authors:  R Lill; J M Robertson; W Wintermeyer
Journal:  EMBO J       Date:  1989-12-01       Impact factor: 11.598

8.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

9.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  49 in total

Review 1.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

2.  Translocation at work.

Authors:  John Achenbach; Knud H Nierhaus
Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

3.  Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.

Authors:  Eva Kummer; Nenad Ban
Journal:  EMBO J       Date:  2020-06-30       Impact factor: 11.598

Review 4.  Probing the mechanisms of translation with force.

Authors:  Christian M Kaiser; Ignacio Tinoco
Journal:  Chem Rev       Date:  2014-01-09       Impact factor: 60.622

5.  Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Authors:  Jie Zhou; Laura Lancaster; John Paul Donohue; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

6.  Multiplication of Ribosomal P-Stalk Proteins Contributes to the Fidelity of Translation.

Authors:  Leszek Wawiórka; Eliza Molestak; Monika Szajwaj; Barbara Michalec-Wawiórka; Mateusz Mołoń; Lidia Borkiewicz; Przemysław Grela; Aleksandra Boguszewska; Marek Tchórzewski
Journal:  Mol Cell Biol       Date:  2017-08-11       Impact factor: 4.272

7.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

8.  Visualization of two transfer RNAs trapped in transit during elongation factor G-mediated translocation.

Authors:  David J F Ramrath; Laura Lancaster; Thiemo Sprink; Thorsten Mielke; Justus Loerke; Harry F Noller; Christian M T Spahn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

9.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

10.  Functional divergence between the two P1-P2 stalk dimers on the ribosome in their interaction with ricin A chain.

Authors:  Przemysław Grela; Xiao-Ping Li; Marek Tchórzewski; Nilgun E Tumer
Journal:  Biochem J       Date:  2014-05-15       Impact factor: 3.857

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