Literature DB >> 24362468

EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Hiroshi Yamamoto1, Yan Qin2, John Achenbach3, Chengmin Li4, Jaroslaw Kijek5, Christian M T Spahn6, Knud H Nierhaus7.   

Abstract

Ribosomes translate the codon sequence of an mRNA into the amino acid sequence of the corresponding protein. One of the most crucial events is the translocation reaction, which involves movement of both the mRNA and the attached tRNAs by one codon length and is catalysed by the GTPase elongation factor G (EF-G). Interestingly, recent studies have identified a structurally related GTPase, EF4, that catalyses movement of the tRNA2-mRNA complex in the opposite direction when the ribosome stalls, which is known as back-translocation. In this Review, we describe recent insights into the mechanistic basis of both translocation and back-translocation.

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Year:  2013        PMID: 24362468     DOI: 10.1038/nrmicro3176

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  115 in total

1.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

2.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

3.  Peptidyl-tRNA regulates the GTPase activity of translation factors.

Authors:  Andrey V Zavialov; Måns Ehrenberg
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

4.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

Authors:  Nina Clementi; Anna Chirkova; Barbara Puffer; Ronald Micura; Norbert Polacek
Journal:  Nat Chem Biol       Date:  2010-03-28       Impact factor: 15.040

Review 5.  The assembly of prokaryotic ribosomes.

Authors:  K H Nierhaus
Journal:  Biochimie       Date:  1991-06       Impact factor: 4.079

Review 6.  The allosteric three-site model for the ribosomal elongation cycle: features and future.

Authors:  K H Nierhaus
Journal:  Biochemistry       Date:  1990-05-29       Impact factor: 3.162

7.  Rotation of the head of the 30S ribosomal subunit during mRNA translocation.

Authors:  Zhuojun Guo; Harry F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-27       Impact factor: 11.205

8.  Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors.

Authors:  T P Hausner; J Atmadja; K H Nierhaus
Journal:  Biochimie       Date:  1987-09       Impact factor: 4.079

9.  Ribosomal protein L27 participates in both 50 S subunit assembly and the peptidyl transferase reaction.

Authors:  I K Wower; J Wower; R A Zimmermann
Journal:  J Biol Chem       Date:  1998-07-31       Impact factor: 5.157

10.  Contribution of intersubunit bridges to the energy barrier of ribosomal translocation.

Authors:  Qi Liu; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

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  36 in total

1.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

Review 2.  Mechanisms of ribosome rescue in bacteria.

Authors:  Kenneth C Keiler
Journal:  Nat Rev Microbiol       Date:  2015-04-13       Impact factor: 60.633

3.  EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.

Authors:  Guangqiao Liu; Guangtao Song; Danyang Zhang; Dejiu Zhang; Zhikai Li; Zhixin Lyu; Jianshu Dong; John Achenbach; Weimin Gong; Xin Sheng Zhao; Knud H Nierhaus; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

4.  EF4 reveals the energy barrier for tRNA back-translocation in the peptidyl transferase center.

Authors:  Guangtao Song; Yan Qin
Journal:  RNA Biol       Date:  2016-07-29       Impact factor: 4.652

Review 5.  Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Authors:  Stefan Arenz; Daniel N Wilson
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

6.  Step back for seminal translation.

Authors:  Shu-Bing Qian
Journal:  Nat Struct Mol Biol       Date:  2016-05-04       Impact factor: 15.369

7.  Avilamycin and evernimicin induce structural changes in rProteins uL16 and CTC that enhance the inhibition of A-site tRNA binding.

Authors:  Miri Krupkin; Itai Wekselman; Donna Matzov; Zohar Eyal; Yael Diskin Posner; Haim Rozenberg; Ella Zimmerman; Anat Bashan; Ada Yonath
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-19       Impact factor: 11.205

8.  Mg2+ regulates transcription of mgtA in Salmonella Typhimurium via translation of proline codons during synthesis of the MgtL peptide.

Authors:  Aaron R Gall; Kirill A Datsenko; Nara Figueroa-Bossi; Lionello Bossi; Isao Masuda; Ya-Ming Hou; Laszlo N Csonka
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

9.  Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome.

Authors:  Veerendra Kumar; Rya Ero; Tofayel Ahmed; Kwok Jian Goh; Yin Zhan; Shashi Bhushan; Yong-Gui Gao
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

10.  Mammalian elongation factor 4 regulates mitochondrial translation essential for spermatogenesis.

Authors:  Yanyan Gao; Xiufeng Bai; Dejiu Zhang; Chunsheng Han; Jing Yuan; Wenbin Liu; Xintao Cao; Zilei Chen; Fugen Shangguan; Zhenyuan Zhu; Fei Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-04-11       Impact factor: 15.369

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