Literature DB >> 20057045

Molecular replacement with MOLREP.

Alexei Vagin1, Alexei Teplyakov.   

Abstract

MOLREP is an automated program for molecular replacement that utilizes a number of original approaches to rotational and translational search and data preparation. Since the first publication describing the program, MOLREP has acquired a variety of features that include weighting of the X-ray data and search models, multi-copy search, fitting the model into electron density, structural superposition of two models and rigid-body refinement. The program can run in a fully automatic mode using optimized parameters calculated from the input data.

Mesh:

Year:  2009        PMID: 20057045     DOI: 10.1107/S0907444909042589

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  1655 in total

1.  The role of conserved surface hydrophobic residues in the carbapenemase activity of the class D β-lactamases.

Authors:  Marta Toth; Clyde A Smith; Nuno T Antunes; Nichole K Stewart; Lauren Maltz; Sergei B Vakulenko
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-07-28       Impact factor: 7.652

2.  Structures of endo-1,5-α-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides.

Authors:  Asako Yamaguchi; Yuri Sogabe; Satomi Fukuoka; Takuo Sakai; Toshiji Tada
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-11-26       Impact factor: 1.056

3.  High-resolution structure of the recombinant sweet-tasting protein thaumatin I.

Authors:  Tetsuya Masuda; Keisuke Ohta; Bunzo Mikami; Naofumi Kitabatake
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-24

4.  Crystallization and preliminary X-ray crystallographic analysis of dihydrouridine synthase from Thermus thermophilus and its complex with tRNA.

Authors:  Futao Yu; Yoshikazu Tanaka; Shiho Yamamoto; Akiyoshi Nakamura; Shunsuke Kita; Nagisa Hirano; Isao Tanaka; Min Yao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-25

5.  O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking.

Authors:  Hideyuki Takeuchi; Hongjun Yu; Huilin Hao; Megumi Takeuchi; Atsuko Ito; Huilin Li; Robert S Haltiwanger
Journal:  J Biol Chem       Date:  2017-07-20       Impact factor: 5.157

6.  Specific recognition of linear polyubiquitin by A20 zinc finger 7 is involved in NF-κB regulation.

Authors:  Fuminori Tokunaga; Hiroshi Nishimasu; Ryuichiro Ishitani; Eiji Goto; Takuya Noguchi; Kazuhiro Mio; Kiyoko Kamei; Averil Ma; Kazuhiro Iwai; Osamu Nureki
Journal:  EMBO J       Date:  2012-08-28       Impact factor: 11.598

7.  Expression, purification, crystallization and preliminary X-ray crystallographic studies of hepatitis B virus core fusion protein corresponding to octahedral particles.

Authors:  Masaki Kikuchi; Shinichiro Iwabuchi; Tatsuhiko Kikkou; Keiichi Noguchi; Masafumi Odaka; Masafumi Yohda; Masaaki Kawata; Chikara Sato; Osamu Matsumoto
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-31

8.  BTN3A1 Discriminates γδ T Cell Phosphoantigens from Nonantigenic Small Molecules via a Conformational Sensor in Its B30.2 Domain.

Authors:  Mahboob Salim; Timothy J Knowles; Alfie T Baker; Martin S Davey; Mark Jeeves; Pooja Sridhar; John Wilkie; Carrie R Willcox; Hachemi Kadri; Taher E Taher; Pierre Vantourout; Adrian Hayday; Youcef Mehellou; Fiyaz Mohammed; Benjamin E Willcox
Journal:  ACS Chem Biol       Date:  2017-09-14       Impact factor: 5.100

9.  Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.

Authors:  Olga Otrusinová; Gabriel Demo; Petr Padrta; Zuzana Jaseňáková; Blanka Pekárová; Zuzana Gelová; Agnieszka Szmitkowska; Pavel Kadeřávek; Séverine Jansen; Milan Zachrdla; Tomáš Klumpler; Jaromír Marek; Jozef Hritz; Lubomír Janda; Hideo Iwaï; Michaela Wimmerová; Jan Hejátko; Lukáš Žídek
Journal:  J Biol Chem       Date:  2017-08-31       Impact factor: 5.157

10.  Crystallization, characterization and preliminary X-ray crystallographic analysis of GK2848, a putative carbonic anhydrase of Geobacillus kaustophilus.

Authors:  Preethi Ragunathan; Gokul Raghunath; Seiki Kuramitsu; Shigeyuki Yokoyama; Thirumananseri Kumarevel; Karthe Ponnuraj
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-31
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