| Literature DB >> 23746260 |
Judith P Klinman1, Amnon Kohen.
Abstract
The relationship between protein dynamics and function is a subject of considerable contemporary interest. Although protein motions are frequently observed during ligand binding and release steps, the contribution of protein motions to the catalysis of bond making/breaking processes is more difficult to probe and verify. Here, we show how the quantum mechanical hydrogen tunneling associated with enzymatic C-H bond cleavage provides a unique window into the necessity of protein dynamics for achieving optimal catalysis. Experimental findings support a hierarchy of thermodynamically equilibrated motions that control the H-donor and -acceptor distance and active-site electrostatics, creating an ensemble of conformations suitable for H-tunneling. A possible extension of this view to methyl transfer and other catalyzed reactions is also presented. The impact of understanding these dynamics on the conceptual framework for enzyme activity, inhibitor/drug design, and biomimetic catalyst design is likely to be substantial.Entities:
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Year: 2013 PMID: 23746260 PMCID: PMC4066974 DOI: 10.1146/annurev-biochem-051710-133623
Source DB: PubMed Journal: Annu Rev Biochem ISSN: 0066-4154 Impact factor: 23.643