Literature DB >> 12773622

Protein structure change studied by hydrogen-deuterium exchange, functional labeling, and mass spectrometry.

Joan J Englander1, Charyl Del Mar, Will Li, S Walter Englander, Jack S Kim, David D Stranz, Yoshitomo Hamuro, Virgil L Woods.   

Abstract

An automated high-throughput, high-resolution deuterium exchange HPLC-MS method (DXMS) was used to extend previous hydrogen exchange studies on the position and energetic role of regulatory structure changes in hemoglobin. The results match earlier highly accurate but much more limited tritium exchange results, extend the analysis to the entire sequence of both hemoglobin subunits, and identify some energetically important changes. Allosterically sensitive amide hydrogens located at near amino acid resolution help to confirm the reality of local unfolding reactions and their use to evaluate resolved structure changes in terms of allosteric free energy.

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Year:  2003        PMID: 12773622      PMCID: PMC165829          DOI: 10.1073/pnas.1232301100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

Review 1.  Protein folding intermediates and pathways studied by hydrogen exchange.

Authors:  S W Englander
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

2.  Phosphorylation driven motions in the COOH-terminal Src kinase, CSK, revealed through enhanced hydrogen-deuterium exchange and mass spectrometry (DXMS).

Authors:  Yoshitomo Hamuro; Lilly Wong; Jennifer Shaffer; Jack S Kim; David D Stranz; Patricia A Jennings; Virgil L Woods; Joseph A Adams
Journal:  J Mol Biol       Date:  2002-11-08       Impact factor: 5.469

3.  Protein hydrogen exchange mechanism: local fluctuations.

Authors:  Haripada Maity; Woon Ki Lim; Jon N Rumbley; S Walter Englander
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

4.  High resolution, high-throughput amide deuterium exchange-mass spectrometry (DXMS) determination of protein binding site structure and dynamics: utility in pharmaceutical design.

Authors:  V L Woods; Y Hamuro
Journal:  J Cell Biochem Suppl       Date:  2001

5.  Hydrogen exchange study of some polynucleotides and transfer RNA.

Authors:  J J Englander; N R Kallenbach; S W Englander
Journal:  J Mol Biol       Date:  1972-01-14       Impact factor: 5.469

6.  X-ray diffraction study of binding of 2,3-diphosphoglycerate to human deoxyhaemoglobin.

Authors:  A Arnone
Journal:  Nature       Date:  1972-05-19       Impact factor: 49.962

7.  Hydrogen exchnge studies of respiratory proteins. II. Detection of discrete, ligand-induced changes in hemoglobin.

Authors:  S W Englander; C Mauel
Journal:  J Biol Chem       Date:  1972-04-25       Impact factor: 5.157

Review 8.  Hydrogen exchange in proteins.

Authors:  A Hvidt; S O Nielsen
Journal:  Adv Protein Chem       Date:  1966

9.  Dynamics of cAPK type IIbeta activation revealed by enhanced amide H/2H exchange mass spectrometry (DXMS).

Authors:  Yoshimoto Hamuro; Kerri M Zawadzki; Jack S Kim; David D Stranz; Susan S Taylor; Virgil L Woods
Journal:  J Mol Biol       Date:  2003-04-11       Impact factor: 5.469

10.  Domain organization of D-AKAP2 revealed by enhanced deuterium exchange-mass spectrometry (DXMS).

Authors:  Yoshitomo Hamuro; Lora Burns; Jaume Canaves; Ross Hoffman; Susan Taylor; Virgil Woods
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

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  82 in total

1.  New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry.

Authors:  Jiawei Chen; Weidong Cui; Daryl Giblin; Michael L Gross
Journal:  J Am Soc Mass Spectrom       Date:  2012-06-06       Impact factor: 3.109

2.  Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.

Authors:  Dennis Pantazatos; Jack S Kim; Heath E Klock; Raymond C Stevens; Ian A Wilson; Scott A Lesley; Virgil L Woods
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  The prohormone proenkephalin possesses differential conformational features of subdomains revealed by rapid H-D exchange mass spectrometry.

Authors:  Weiya D Lu; Tong Liu; Sheng Li; Virgil L Woods; Vivian Hook
Journal:  Protein Sci       Date:  2012-01-04       Impact factor: 6.725

4.  Probing the conformation of a prion protein fibril with hydrogen exchange.

Authors:  Steven M Damo; Aaron H Phillips; Anisa L Young; Sheng Li; Virgil L Woods; David E Wemmer
Journal:  J Biol Chem       Date:  2010-08-02       Impact factor: 5.157

5.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

6.  ExMS: data analysis for HX-MS experiments.

Authors:  Zhong-Yuan Kan; Leland Mayne; Palaniappan Sevugan Chetty; S Walter Englander
Journal:  J Am Soc Mass Spectrom       Date:  2011-09-15       Impact factor: 3.109

7.  Local stability of Rhodobacter capsulatus cytochrome c2 probed by solution phase hydrogen/deuterium exchange and mass spectrometry.

Authors:  Guilong Cheng; Vicki H Wysocki; Michael A Cusanovich
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

8.  Resolving isotopic fine structure to detect and quantify natural abundance- and hydrogen/deuterium exchange-derived isotopomers.

Authors:  Qian Liu; Michael L Easterling; Jeffrey N Agar
Journal:  Anal Chem       Date:  2013-12-20       Impact factor: 6.986

9.  Differential accessibilities of dibasic prohormone processing sites of proenkephalin to the aqueous environment revealed by H-D exchange mass spectrometry.

Authors:  Weiya D Lu; Kyle Asmus; Shin-Rong Hwang; Sheng Li; Virgil L Woods; Vivian Hook
Journal:  Biochemistry       Date:  2009-02-24       Impact factor: 3.162

10.  Sequence-specific conformational flexibility of SNARE transmembrane helices probed by hydrogen/deuterium exchange.

Authors:  Walter Stelzer; Bernhard C Poschner; Holger Stalz; Albert J Heck; Dieter Langosch
Journal:  Biophys J       Date:  2008-05-02       Impact factor: 4.033

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