Literature DB >> 21958159

Enzymatic methyl transfer: role of an active site residue in generating active site compaction that correlates with catalytic efficiency.

Jianyu Zhang1, Judith P Klinman.   

Abstract

Human catechol-O-methyltransferase (COMT) catalyzes a methyl transfer from S-adenosylmethionine (AdoMet) to dopamine. Site-specific mutants at three positions (Tyr68, Trp38, and Val108) have been characterized with regard to product distribution, catalytic efficiency, and secondary kinetic isotope effects. The series of mutations at Tyr68 within wild-type protein and the common polymorphic variant (Val108Met) yields a linear correlation between the catalytic efficiency and the size of the secondary kinetic isotope effect. We conclude that active site compaction in COMT is modulated by a proximal side chain residing behind the sulfur-bearing methyl group of AdoMet. These findings are discussed in the context of the active site compression that has been postulated to accompany enzyme-supported hydrogen tunneling.

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Year:  2011        PMID: 21958159      PMCID: PMC3219439          DOI: 10.1021/ja207467d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

Review 1.  AdoMet-dependent methylation, DNA methyltransferases and base flipping.

Authors:  X Cheng; R J Roberts
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

2.  Enzyme dynamics: Control of active-site compression.

Authors:  Judith P Klinman
Journal:  Nat Chem       Date:  2010-11       Impact factor: 24.427

3.  Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Authors:  Judith P Klinman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

Review 4.  Tunneling and dynamics in enzymatic hydride transfer.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

5.  QM/MM simulations for methyl transfer in solution and catalysed by COMT: ensemble-averaging of kinetic isotope effects.

Authors:  Natalia Kanaan; J Javier Ruiz Pernía; Ian H Williams
Journal:  Chem Commun (Camb)       Date:  2008-10-29       Impact factor: 6.222

6.  Chemical achievement and hope for the future.

Authors:  L PAULING
Journal:  Am Sci       Date:  1948-01       Impact factor: 0.548

Review 7.  Catalysis of methyl group transfers involving tetrahydrofolate and B(12).

Authors:  Stephen W Ragsdale
Journal:  Vitam Horm       Date:  2008       Impact factor: 3.421

8.  Kinetics of human soluble and membrane-bound catechol O-methyltransferase: a revised mechanism and description of the thermolabile variant of the enzyme.

Authors:  T Lotta; J Vidgren; C Tilgmann; I Ulmanen; K Melén; I Julkunen; J Taskinen
Journal:  Biochemistry       Date:  1995-04-04       Impact factor: 3.162

9.  QM/MM determination of kinetic isotope effects for COMT-catalyzed methyl transfer does not support compression hypothesis.

Authors:  Giuseppe D Ruggiero; Ian H Williams; Maite Roca; Vicent Moliner; Iñaki Tuñón
Journal:  J Am Chem Soc       Date:  2004-07-21       Impact factor: 15.419

10.  Crystal structures of human 108V and 108M catechol O-methyltransferase.

Authors:  K Rutherford; I Le Trong; R E Stenkamp; W W Parson
Journal:  J Mol Biol       Date:  2008-04-23       Impact factor: 5.469

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  35 in total

1.  Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36.

Authors:  Myles B Poulin; Jessica L Schneck; Rosalie E Matico; Patrick J McDevitt; Michael J Huddleston; Wangfang Hou; Neil W Johnson; Sara H Thrall; Thomas D Meek; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

2.  Studying the role of protein dynamics in an SN2 enzyme reaction using free-energy surfaces and solvent coordinates.

Authors:  Rafael García-Meseguer; Sergio Martí; J Javier Ruiz-Pernía; Vicent Moliner; Iñaki Tuñón
Journal:  Nat Chem       Date:  2013-05-26       Impact factor: 24.427

3.  Human DNMT1 transition state structure.

Authors:  Quan Du; Zhen Wang; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

Review 4.  Perspective: Defining and quantifying the role of dynamics in enzyme catalysis.

Authors:  Arieh Warshel; Ram Prasad Bora
Journal:  J Chem Phys       Date:  2016-05-14       Impact factor: 3.488

5.  High-performance liquid chromatography separation of the (S,S)- and (R,S)-forms of S-adenosyl-L-methionine.

Authors:  Jianyu Zhang; Judith P Klinman
Journal:  Anal Biochem       Date:  2015-02-11       Impact factor: 3.365

Review 6.  Engineered control of enzyme structural dynamics and function.

Authors:  David D Boehr; Rebecca N D'Amico; Kathleen F O'Rourke
Journal:  Protein Sci       Date:  2018-02-16       Impact factor: 6.725

7.  High-resolution studies of hydride transfer in the ferredoxin:NADP+ reductase superfamily.

Authors:  Kelsey M Kean; Russell A Carpenter; Vittorio Pandini; Giuliana Zanetti; Andrea R Hall; Rick Faber; Alessandro Aliverti; P Andrew Karplus
Journal:  FEBS J       Date:  2017-08-29       Impact factor: 5.542

8.  Revealing quantum mechanical effects in enzyme catalysis with large-scale electronic structure simulation.

Authors:  Zhongyue Yang; Rimsha Mehmood; Mengyi Wang; Helena W Qi; Adam H Steeves; Heather J Kulik
Journal:  React Chem Eng       Date:  2018-11-29       Impact factor: 4.239

9.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

10.  Heavy-enzyme kinetic isotope effects on proton transfer in alanine racemase.

Authors:  Michael D Toney; Joan Nieto Castro; Trevor A Addington
Journal:  J Am Chem Soc       Date:  2013-02-05       Impact factor: 15.419

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