Literature DB >> 16873120

Linking protein structure and dynamics to catalysis: the role of hydrogen tunnelling.

Judith P Klinman1.   

Abstract

Early studies of enzyme-catalysed hydride transfer reactions indicated kinetic anomalies that were initially interpreted in the context of a 'tunnelling correction'. An alternate model for tunnelling emerged following studies of the hydrogen atom transfer catalysed by the enzyme soybean lipoxygenase. This invokes full tunnelling of all isotopes of hydrogen, with reaction barriers reflecting the heavy atom, environmental reorganization terms. Using the latter approach, we offer an integration of the aggregate data implicating hydrogen tunnelling in enzymes (i.e. deviations from Swain-Schaad relationships and the semi-classical temperature dependence of the hydrogen isotope effect). The impact of site-specific mutations of enzymes plays a critical role in our understanding of the factors that control tunnelling in enzyme reactions.

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Year:  2006        PMID: 16873120      PMCID: PMC1647309          DOI: 10.1098/rstb.2006.1870

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  29 in total

1.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

2.  Is Hydrogen Tunneling Involved in AcylCoA Desaturase Reactions? The Case of a Delta(9) Desaturase That Transforms (E)-11-Tetradecenoic Acid into (Z,E)-9,11-Tetradecadienoic Acid This work was supported by Comisión Asesora de Investigación Científica y Técnica (grant AGF 98-0844), Comissionat per a Universitats i Recerca from the Generalitat de Catalunya (grant 97SGR-0021) and SEDQ S.A. We thank Prof. Nigel S. Scrutton (University of Leicester, UK) and Dr. Francisco J. Sanchez-Baeza (IIQAB, Barcelona, Spain) for helpful discussions, Dr. Josefina Casas and Dr. Antonio Delgado for critically reading the manuscript, and Germán Lázaro for rearing the insects used in this study. J.L.A. thanks the Spanish Ministry of Education and Science for a Postdoctoral Reincorporation Contract.

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Journal:  Angew Chem Int Ed Engl       Date:  2000-09-15       Impact factor: 15.336

3.  Tunneling and coupled motion in the Escherichia coli dihydrofolate reductase catalysis.

Authors:  R Steven Sikorski; Lin Wang; Kelli A Markham; P T Ravi Rajagopalan; Stephen J Benkovic; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

4.  Probes of hydrogen tunneling with horse liver alcohol dehydrogenase at subzero temperatures.

Authors:  S Tsai ; J P Klinman
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

5.  Deuterium isotope effects during carbon-hydrogen bond cleavage by trimethylamine dehydrogenase. Implications for mechanism and vibrationally assisted hydrogen tunneling in wild-type and mutant enzymes.

Authors:  J Basran; M J Sutcliffe; N S Scrutton
Journal:  J Biol Chem       Date:  2001-04-13       Impact factor: 5.157

6.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

7.  Boundary conditions for the Swain-Schaad relationship as a criterion for hydrogen tunneling.

Authors:  Amnon Kohen; Jan H Jensen
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

8.  Comparison of rates and kinetic isotope effects using PEG-modified variants and glycoforms of glucose oxidase: the relationship of modification of the protein envelope to C-H activation and tunneling.

Authors:  Sean L Seymour; Judith P Klinman
Journal:  Biochemistry       Date:  2002-07-09       Impact factor: 3.162

9.  Crystal structure and amide H/D exchange of binary complexes of alcohol dehydrogenase from Bacillus stearothermophilus: insight into thermostability and cofactor binding.

Authors:  Christopher Ceccarelli; Zhao-Xun Liang; Michael Strickler; Gerd Prehna; Barry M Goldstein; Judith P Klinman; Brian J Bahnson
Journal:  Biochemistry       Date:  2004-05-11       Impact factor: 3.162

10.  Evidence that both protium and deuterium undergo significant tunneling in the reaction catalyzed by bovine serum amine oxidase.

Authors:  K L Grant; J P Klinman
Journal:  Biochemistry       Date:  1989-08-08       Impact factor: 3.162

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  40 in total

1.  Synthesis of Site-Specifically 13C Labeled Linoleic Acids.

Authors:  Adam R Offenbacher; Hui Zhu; Judith P Klinman
Journal:  Tetrahedron Lett       Date:  2016-08-22       Impact factor: 2.415

2.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Enzymatic methyl transfer: role of an active site residue in generating active site compaction that correlates with catalytic efficiency.

Authors:  Jianyu Zhang; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2011-10-10       Impact factor: 15.419

4.  A critical test of the "tunneling and coupled motion" concept in enzymatic alcohol oxidation.

Authors:  Daniel Roston; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2013-09-10       Impact factor: 15.419

5.  Arrhenius curves of hydrogen transfers: tunnel effects, isotope effects and effects of pre-equilibria.

Authors:  Hans-Heinrich Limbach; Juan Miguel Lopez; Amnon Kohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

6.  Coordinated effects of distal mutations on environmentally coupled tunneling in dihydrofolate reductase.

Authors:  Lin Wang; Nina M Goodey; Stephen J Benkovic; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-10       Impact factor: 11.205

7.  Characterizing the dynamics of functionally relevant complexes of formate dehydrogenase.

Authors:  Jigar N Bandaria; Samrat Dutta; Michael W Nydegger; William Rock; Amnon Kohen; Christopher M Cheatum
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

8.  Stereospecific multiple isotopic labeling of benzyl alcohol.

Authors:  Daniel Roston; Amnon Kohen
Journal:  J Labelled Comp Radiopharm       Date:  2013-12-11       Impact factor: 1.921

9.  Kinetic isotope effects on aromatic and benzylic hydroxylation by Chromobacterium violaceum phenylalanine hydroxylase as probes of chemical mechanism and reactivity.

Authors:  Aram J Panay; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2008-09-26       Impact factor: 3.162

10.  Chemistry of personalized solar energy.

Authors:  Daniel G Nocera
Journal:  Inorg Chem       Date:  2009-11-02       Impact factor: 5.165

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