Literature DB >> 22632111

Pressure effects on enzyme-catalyzed quantum tunneling events arise from protein-specific structural and dynamic changes.

Sam Hay1, Linus O Johannissen, Parvinder Hothi, Michael J Sutcliffe, Nigel S Scrutton.   

Abstract

The rate and kinetic isotope effect (KIE) on proton transfer during the aromatic amine dehydrogenase-catalyzed reaction with phenylethylamine shows complex pressure and temperature dependences. We are able to rationalize these effects within an environmentally coupled tunneling model based on constant pressure molecular dynamics (MD) simulations. As pressure appears to act anisotropically on the enzyme, perturbation of the reaction coordinate (donor-acceptor compression) is, in this case, marginal. Therefore, while we have previously demonstrated that pressure and temperature dependences can be used to infer H-tunneling and the involvement of promoting vibrations, these effects should not be used in the absence of atomistic insight, as they can vary greatly for different enzymes. We show that a pressure-dependent KIE is not a definitive hallmark of quantum mechanical H-tunneling during an enzyme-catalyzed reaction and that pressure-independent KIEs cannot be used to exclude tunneling contributions or a role for promoting vibrations in the enzyme-catalyzed reaction. We conclude that coupling of MD calculations with experimental rate and KIE studies is required to provide atomistic understanding of pressure effects in enzyme-catalyzed reactions.

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Year:  2012        PMID: 22632111     DOI: 10.1021/ja3024115

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

Review 1.  Hydrogen tunneling links protein dynamics to enzyme catalysis.

Authors:  Judith P Klinman; Amnon Kohen
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

2.  Hydrostatic Pressure Studies Distinguish Global from Local Protein Motions in C-H Activation by Soybean Lipoxygenase-1.

Authors:  Shenshen Hu; Jérôme Cattin-Ortolá; Jeffrey W Munos; Judith P Klinman
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-27       Impact factor: 15.336

3.  Protein Mass Effects on Formate Dehydrogenase.

Authors:  Chethya Ranasinghe; Qi Guo; Paul J Sapienza; Andrew L Lee; Daniel M Quinn; Christopher M Cheatum; Amnon Kohen
Journal:  J Am Chem Soc       Date:  2017-11-27       Impact factor: 16.383

Review 4.  Does the pressure dependence of kinetic isotope effects report usefully on dynamics in enzyme H-transfer reactions?

Authors:  Robin Hoeven; Derren J Heyes; Sam Hay; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-01-29       Impact factor: 5.542

5.  Nonequivalence of Second Sphere "Noncatalytic" Residues in Pentaerythritol Tetranitrate Reductase in Relation to Local Dynamics Linked to H-Transfer in Reactions with NADH and NADPH Coenzymes.

Authors:  Andreea I Iorgu; Nicola J Baxter; Matthew J Cliff; Colin Levy; Jonathan P Waltho; Sam Hay; Nigel S Scrutton
Journal:  ACS Catal       Date:  2018-10-26       Impact factor: 13.084

6.  Probing the Transition State in Enzyme Catalysis by High-Pressure NMR Dynamics.

Authors:  John B Stiller; S Jordan Kerns; Marc Hoemberger; Young-Jin Cho; Renee Otten; Michael F Hagan; Dorothee Kern
Journal:  Nat Catal       Date:  2019-06-24

Review 7.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Chem Soc Rev       Date:  2015-03-07       Impact factor: 54.564

  7 in total

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