Literature DB >> 23735044

A genetically encoded acrylamide functionality.

Yan-Jiun Lee1, Bo Wu, Jeffrey E Raymond, Yu Zeng, Xinqiang Fang, Karen L Wooley, Wenshe R Liu.   

Abstract

Nε-Acryloyl-l-lysine, a noncanonical amino acid with an electron deficient olefin, is genetically encoded in Escherichia coli using a pyrrolysyl-tRNA synthetase mutant in coordination with tRNACUAPyl. The acrylamide moiety is stable in cells, whereas it is active enough to perform a diverse set of unique reactions for protein modifications in vitro. These reactions include 1,4-addition, radical polymerization, and 1,3-dipolar cycloaddition. We demonstrate that a protein incorporated with Nε-acryloyl-l-lysine is efficiently modified with thiol-containing nucleophiles at slightly alkali conditions, and the acrylamide moiety also allows rapid radical copolymerization of the same protein into a polyacrylamide hydrogel at physiological pH. At physiological conditions, the acrylamide functionality undergoes a fast 1,3-dipolar cycloaddition reaction with diaryl nitrile imine to show turn-on fluorescence. We have used this observation to demonstrate site-specific fluorescent labeling of proteins incorporated with Nε-acryloyl-l-lysine both in vitro and in living cells. This critical development allows easy access to an array of modified proteins for applications where high specificity and reaction efficiency are needed.

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Year:  2013        PMID: 23735044      PMCID: PMC3746000          DOI: 10.1021/cb400267m

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  43 in total

1.  A rationally designed pyrrolysyl-tRNA synthetase mutant with a broad substrate spectrum.

Authors:  Yane-Shih Wang; Xinqiang Fang; Ashley L Wallace; Bo Wu; Wenshe R Liu
Journal:  J Am Chem Soc       Date:  2012-02-06       Impact factor: 15.419

Review 2.  Universal rules and idiosyncratic features in tRNA identity.

Authors:  R Giegé; M Sissler; C Florentz
Journal:  Nucleic Acids Res       Date:  1998-11-15       Impact factor: 16.971

3.  Genetically encoded alkenes in yeast.

Authors:  Hui-Wang Ai; Weijun Shen; Eric Brustad; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

4.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

5.  Genetically encoded 1,2-aminothiols facilitate rapid and site-specific protein labeling via a bio-orthogonal cyanobenzothiazole condensation.

Authors:  Duy P Nguyen; Thomas Elliott; Matthew Holt; Tom W Muir; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-07-07       Impact factor: 15.419

6.  Genetic incorporation of an aliphatic keto-containing amino acid into proteins for their site-specific modifications.

Authors:  Ying Huang; Wei Wan; William K Russell; Pei-Jing Pai; Zhiyong Wang; David H Russell; Wenshe Liu
Journal:  Bioorg Med Chem Lett       Date:  2009-12-24       Impact factor: 2.823

7.  Use of protein-acrylamide copolymer hydrogels for measuring protein concentration and activity.

Authors:  Shawn B Brueggemeier; Stephen J Kron; Sean P Palecek
Journal:  Anal Biochem       Date:  2004-06-15       Impact factor: 3.365

8.  Genetic encoding of a bicyclo[6.1.0]nonyne-charged amino acid enables fast cellular protein imaging by metal-free ligation.

Authors:  Annika Borrmann; Sigrid Milles; Tilman Plass; Jan Dommerholt; Jorge M M Verkade; Manfred Wiessler; Carsten Schultz; Jan C M van Hest; Floris L van Delft; Edward A Lemke
Journal:  Chembiochem       Date:  2012-09-03       Impact factor: 3.164

9.  Genetic Encoding of bicyclononynes and trans-cyclooctenes for site-specific protein labeling in vitro and in live mammalian cells via rapid fluorogenic Diels-Alder reactions.

Authors:  Kathrin Lang; Lloyd Davis; Stephen Wallace; Mohan Mahesh; Daniel J Cox; Melissa L Blackman; Joseph M Fox; Jason W Chin
Journal:  J Am Chem Soc       Date:  2012-06-13       Impact factor: 15.419

10.  Expanding the genetic code of an animal.

Authors:  Sebastian Greiss; Jason W Chin
Journal:  J Am Chem Soc       Date:  2011-08-22       Impact factor: 15.419

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  43 in total

Review 1.  Photo-Triggered Click Chemistry for Biological Applications.

Authors:  András Herner; Qing Lin
Journal:  Top Curr Chem (Cham)       Date:  2015-12-11

2.  A Versatile Approach for Site-Specific Lysine Acylation in Proteins.

Authors:  Zhipeng A Wang; Yadagiri Kurra; Xin Wang; Yu Zeng; Yan-Jiun Lee; Vangmayee Sharma; Hening Lin; Susie Y Dai; Wenshe R Liu
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-02       Impact factor: 15.336

Review 3.  Photoclick chemistry: a fluorogenic light-triggered in vivo ligation reaction.

Authors:  Carlo P Ramil; Qing Lin
Journal:  Curr Opin Chem Biol       Date:  2014-07-11       Impact factor: 8.822

4.  A genetically encoded aldehyde for rapid protein labelling.

Authors:  Alfred Tuley; Yan-Jiun Lee; Bo Wu; Zhiyong U Wang; Wenshe R Liu
Journal:  Chem Commun (Camb)       Date:  2014-07-18       Impact factor: 6.222

5.  Enhancing Protein Stability with Genetically Encoded Noncanonical Amino Acids.

Authors:  Jack C Li; Tao Liu; Yan Wang; Angad P Mehta; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2018-11-15       Impact factor: 15.419

6.  Phospha-Michael Addition as a New Click Reaction for Protein Functionalization.

Authors:  Yan-Jiun Lee; Yadagiri Kurra; Wenshe R Liu
Journal:  Chembiochem       Date:  2016-02-16       Impact factor: 3.164

Review 7.  Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool.

Authors:  Wei Wan; Jeffery M Tharp; Wenshe R Liu
Journal:  Biochim Biophys Acta       Date:  2014-03-12

8.  Bioorthogonal oncometabolite ligation.

Authors:  Chloe A Briney; Susana Najera; Jordan L Meier
Journal:  Methods Enzymol       Date:  2019-03-14       Impact factor: 1.600

9.  Efficient and Site-specific Antibody Labeling by Strain-promoted Azide-alkyne Cycloaddition.

Authors:  Sanggil Kim; Wooseok Ko; Hyunji Park; Hyun Soo Lee
Journal:  J Vis Exp       Date:  2016-12-23       Impact factor: 1.355

Review 10.  Design strategies for bioorthogonal smart probes.

Authors:  Peyton Shieh; Carolyn R Bertozzi
Journal:  Org Biomol Chem       Date:  2014-10-15       Impact factor: 3.876

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