Literature DB >> 15158476

Use of protein-acrylamide copolymer hydrogels for measuring protein concentration and activity.

Shawn B Brueggemeier1, Stephen J Kron, Sean P Palecek.   

Abstract

We report the development and characterization of a polyacrylamide-based protein immobilization strategy for surface-bound protein assays, including concentration detection, binding affinity, and enzyme kinetics. Glutathione S-transferase (GST) fusion proteins have been labeled with an acrylic moiety and attached to acrylic-functionalized glass surfaces through copolymerization with acrylic monomer. The specific attachment of GST-green fluorescent protein (GFP) fusion protein was more than sevenfold greater than the nonspecific attachment of nonacrylic-labeled GST-GFP; 0.32 ng/mm(2) of surface-attached GST-GFP was detectable by direct measurement of GFP fluorescence and this lower detection limit was reduced to 0.080 ng/mm(2) using indirect antibody-based detection. The polyacrylamide-based surface attachment strategy was also used to measure the kinetics of substrate phosphorylation by the kinase c-Src. Michaelis-Menten kinetic constants for the reaction occurring in solution were K(m) = 2.7 +/- 1.0 microM and V(max) = 8.1 +/- 3.1 (arbitrary units). Kinetic values for the reaction utilizing surface-immobilized substrate were K(m) = 0.36 +/- 0.033 microM and V(max) = 9.7 +/- 0.63 and were found to be independent of the acrylamide concentration within the copolymer. Such a surface attachment strategy should be applicable to the proteomics field and addresses denaturation and dehydration problems associated with protein microarray development.

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Year:  2004        PMID: 15158476     DOI: 10.1016/j.ab.2004.02.012

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  8 in total

1.  Quantifying the sensitivities of EGF receptor (EGFR) tyrosine kinase inhibitors in drug resistant non-small cell lung cancer (NSCLC) cells using hydrogel-based peptide array.

Authors:  Gargi Ghosh; Xiaoliang Yan; Andrew G Lee; Stephen J Kron; Sean P Palecek
Journal:  Biosens Bioelectron       Date:  2010-08-03       Impact factor: 10.618

2.  Quantification of kinase activity in cell lysates via photopatterned macroporous poly(ethylene glycol) hydrogel arrays in microfluidic channels.

Authors:  Andrew G Lee; David J Beebe; Sean P Palecek
Journal:  Biomed Microdevices       Date:  2012-04       Impact factor: 2.838

3.  Quantitative proteome analysis using D-labeled N-ethylmaleimide and 13C-labeled iodoacetanilide by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Sadamu Kurono; Tamie Kurono; Naoka Komori; Satomi Niwayama; Hiroyuki Matsumoto
Journal:  Bioorg Med Chem       Date:  2006-10-16       Impact factor: 3.641

Review 4.  Protein immobilization techniques for microfluidic assays.

Authors:  Dohyun Kim; Amy E Herr
Journal:  Biomicrofluidics       Date:  2013-07-30       Impact factor: 2.800

5.  Macroporous hydrogel micropillars for quantifying Met kinase activity in cancer cell lysates.

Authors:  Alicia D Powers; Bi Liu; Andrew G Lee; Sean P Palecek
Journal:  Analyst       Date:  2012-07-20       Impact factor: 4.616

6.  Development of macroporous poly(ethylene glycol) hydrogel arrays within microfluidic channels.

Authors:  Andrew G Lee; Christopher P Arena; David J Beebe; Sean P Palecek
Journal:  Biomacromolecules       Date:  2010-10-28       Impact factor: 6.988

7.  A genetically encoded acrylamide functionality.

Authors:  Yan-Jiun Lee; Bo Wu; Jeffrey E Raymond; Yu Zeng; Xinqiang Fang; Karen L Wooley; Wenshe R Liu
Journal:  ACS Chem Biol       Date:  2013-06-18       Impact factor: 5.100

8.  Hydrogel-based protein array for quantifying epidermal growth factor receptor activity in cell lysates.

Authors:  Gargi Ghosh; Andrew G Lee; Sean P Palecek
Journal:  Anal Biochem       Date:  2009-07-05       Impact factor: 3.365

  8 in total

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