Literature DB >> 23455928

Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Mehdi D Esrafili1, Nafiseh Mohammadirad.   

Abstract

Halogen-bonding, a noncovalent interaction between a halogen atom X in one molecule and a negative site in another, plays critical roles in fields as diverse as molecular biology, drug design and material engineering. In this work, we have examined the strength and origin of halogen bonds between carbene CH₂ and XCCY molecules, where X = Cl, Br, I, and Y = H, F, COF, COOH, CF₃, NO₂, CN, NH₂, CH₃, OH. These calculations have been carried out using M06-2X, MP2 and CCSD(T) methods, through analyses of surface electrostatic potentials V S(r) and intermolecular interaction energies. Not surprisingly, the strength of the halogen bonds in the CH₂···XCCY complexes depend on the polarizability of the halogen X and the electron-withdrawing power of the Y group. It is revealed that for a given carbene···X interaction, the electrostatic term is slightly larger (i.e., more negative) than the dispersion term. Comparing the data for the chlorine, bromine and iodine substituted CH₂···XCCY systems, it can be seen that both the polarization and dispersion components of the interaction energy increase with increasing halogen size. One can see that increasing the size and positive nature of a halogen's σ-hole markedly enhances the electrostatic contribution of the halogen-bonding interaction.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23455928     DOI: 10.1007/s00894-013-1804-1

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  34 in total

1.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

2.  Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions.

Authors:  Yan Zhao; Nathan E Schultz; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2006-03       Impact factor: 6.006

3.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

4.  Blue shifts vs red shifts in sigma-hole bonding.

Authors:  Jane S Murray; Monica C Concha; Pat Lane; Pavel Hobza; Peter Politzer
Journal:  J Mol Model       Date:  2008-04-26       Impact factor: 1.810

5.  Σ-holes, π-holes and electrostatically-driven interactions.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Kevin E Riley; Peter Politzer
Journal:  J Mol Model       Date:  2011-05-04       Impact factor: 1.810

6.  Investigation of H-bonding and halogen-bonding effects in dichloroacetic acid: DFT calculations of NQR parameters and QTAIM analysis.

Authors:  Mehdi D Esrafili
Journal:  J Mol Model       Date:  2012-06-27       Impact factor: 1.810

7.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

8.  Energy decomposition analysis of covalent bonds and intermolecular interactions.

Authors:  Peifeng Su; Hui Li
Journal:  J Chem Phys       Date:  2009-07-07       Impact factor: 3.488

9.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

10.  Halogen bonding inside a molecular container.

Authors:  Hamdy S El-Sheshtawy; Bassem S Bassil; Khaleel I Assaf; Ulrich Kortz; Werner M Nau
Journal:  J Am Chem Soc       Date:  2012-11-16       Impact factor: 15.419

View more
  13 in total

1.  Synergistic and diminutive effects between halogen bond and lithium bond in complexes involving aromatic compounds.

Authors:  Mingxiu Liu; Mengyang Cai; Qingzhong Li; Wenzuo Li; Jianbo Cheng
Journal:  J Mol Model       Date:  2015-09-14       Impact factor: 1.810

2.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

3.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

4.  Cooperativity between fluorine-centered halogen bonds: investigation of substituent effects.

Authors:  Mehdi D Esrafili; Mehdi D Esraili; Fariba Mohammadian-Sabet; Parvin Esmailpour; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-10-27       Impact factor: 1.810

5.  Halogen bonds enhanced by σ-hole and π-hole interactions: a comparative study on cooperativity and competition effects between X∙∙∙N and S∙∙∙N interactions in H3N∙∙∙XCN∙∙∙SF2 and H 3N∙∙∙XCN∙∙∙SO2 complexes (X   = F, Cl, Br and I).

Authors:  Mehdi D Esrafili; Mahshad Vakili
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

6.  Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths.

Authors:  Antti Siiskonen; Arri Priimagi
Journal:  J Mol Model       Date:  2017-02-04       Impact factor: 1.810

7.  Theoretical study on cooperative effects between X⋯N and X⋯Carbene halogen bonds (X = F,Cl,Br and I).

Authors:  Mehdi D Esrafili; Fariba Mohammdain-Sabet; Parvin Esmailpour
Journal:  J Mol Model       Date:  2013-09-08       Impact factor: 1.810

8.  Theoretical study of the complementarity in halogen-bonded complexes involving nitrogen and halogen as negative sites.

Authors:  Mehdi D Esrafili; Mahshad Vakili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2014-02-13       Impact factor: 1.810

9.  Characterization of halogen···halogen interactions in crystalline dihalomethane compounds (CH2Cl2, CH2Br2 and CH2I2): a theoretical study.

Authors:  Mehdi D Esrafili; Mahshad Vakili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2014-02-11       Impact factor: 1.810

10.  Substituent effects on cooperativity of pnicogen bonds.

Authors:  Mehdi D Esrafili; Mojhgan Ghanbari; Fariba Mohammadian-Sabet
Journal:  J Mol Model       Date:  2014-09-07       Impact factor: 1.810

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.