Literature DB >> 28161778

Benchmarking DFT methods with small basis sets for the calculation of halogen-bond strengths.

Antti Siiskonen1, Arri Priimagi2.   

Abstract

In recent years, halogen bonding has become an important design tool in crystal engineering, supramolecular chemistry and biosciences. The fundamentals of halogen bonding have been studied extensively with high-accuracy computational methods. Due to its non-covalency, the use of triple-zeta (or larger) basis sets is often recommended when studying halogen bonding. However, in the large systems often encountered in supramolecular chemistry and biosciences, large basis sets can make the calculations far too slow. Therefore, small basis sets, which would combine high computational speed and high accuracy, are in great demand. This study focuses on comparing how well density functional theory (DFT) methods employing small, double-zeta basis sets can estimate halogen-bond strengths. Several methods with triple-zeta basis sets are included for comparison. Altogether, 46 DFT methods were tested using two data sets of 18 and 33 halogen-bonded complexes for which the complexation energies have been previously calculated with the high-accuracy CCSD(T)/CBS method. The DGDZVP basis set performed far better than other double-zeta basis sets, and it even outperformed the triple-zeta basis sets. Due to its small size, it is well-suited to studying halogen bonding in large systems.

Entities:  

Keywords:  Basis set; Benchmarking; Density functional theory; Halogen bonding

Year:  2017        PMID: 28161778     DOI: 10.1007/s00894-017-3212-4

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  48 in total

1.  Basis set exchange: a community database for computational sciences.

Authors:  Karen L Schuchardt; Brett T Didier; Todd Elsethagen; Lisong Sun; Vidhya Gurumoorthi; Jared Chase; Jun Li; Theresa L Windus
Journal:  J Chem Inf Model       Date:  2007-04-12       Impact factor: 4.956

2.  Gaussian basis set of double zeta quality for atoms K through Kr: application in DFT calculations of molecular properties.

Authors:  G G Camiletti; S F Machado; F E Jorge
Journal:  J Comput Chem       Date:  2008-11-15       Impact factor: 3.376

3.  Screened-exchange density functionals with broad accuracy for chemistry and solid-state physics.

Authors:  Roberto Peverati; Donald G Truhlar
Journal:  Phys Chem Chem Phys       Date:  2012-11-06       Impact factor: 3.676

4.  AMBER empirical potential describes the geometry and energy of noncovalent halogen interactions better than advanced semiempirical quantum mechanical method PM6-DH2X.

Authors:  Mahmoud A A Ibrahim
Journal:  J Phys Chem B       Date:  2012-03-06       Impact factor: 2.991

5.  On the spectroscopic and thermochemical properties of ClO, BrO, IO, and their anions.

Authors:  Kirk A Peterson; Benjamin C Shepler; Detlev Figgen; Hermann Stoll
Journal:  J Phys Chem A       Date:  2006-12-28       Impact factor: 2.781

6.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

7.  Halogen bonding in water results in enhanced anion recognition in acyclic and rotaxane hosts.

Authors:  Matthew J Langton; Sean W Robinson; Igor Marques; Vítor Félix; Paul D Beer
Journal:  Nat Chem       Date:  2014-11-17       Impact factor: 24.427

8.  Thermodynamics of halogen bonding in solution: substituent, structural, and solvent effects.

Authors:  Mohammed G Sarwar; Bojan Dragisic; Lee J Salsberg; Christina Gouliaras; Mark S Taylor
Journal:  J Am Chem Soc       Date:  2010-02-10       Impact factor: 15.419

9.  Halogen Bonds: Benchmarks and Theoretical Analysis.

Authors:  Sebastian Kozuch; Jan M L Martin
Journal:  J Chem Theory Comput       Date:  2013-03-25       Impact factor: 6.006

Review 10.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

View more
  4 in total

1.  Multinuclear Metal-Binding Ability of the N-Terminal Region of Human Copper Transporter Ctr1: Dependence Upon pH and Metal Oxidation State.

Authors:  Maria Incoronata Nardella; Mariagrazia Fortino; Alessandra Barbanente; Giovanni Natile; Adriana Pietropaolo; Fabio Arnesano
Journal:  Front Mol Biosci       Date:  2022-05-05

2.  Polycentric binding in complexes of trimethylamine-N-oxide with dihalogens.

Authors:  Olga M Zarechnaya; Aleksei A Anisimov; Eugenii Yu Belov; Nikolai I Burakov; Alexander L Kanibolotsky; Vasilii A Mikhailov
Journal:  RSC Adv       Date:  2021-02-03       Impact factor: 3.361

3.  Isostructural Halogen Exchange and Halogen Bonds: The Case of N-(4-Halogenobenzyl)-3-halogenopyridinium Halogenides.

Authors:  Luka Fotović; Nikola Bedeković; Vladimir Stilinović
Journal:  Cryst Growth Des       Date:  2022-01-05       Impact factor: 4.076

4.  Meta-Hybrid Density Functional Theory Prediction of the Reactivity, Stability, and IGM of Azepane, Oxepane, Thiepane, and Halogenated Cycloheptane.

Authors:  Tomsmith O Unimuke; Hitler Louis; Ededet A Eno; Ernest C Agwamba; Adedapo S Adeyinka
Journal:  ACS Omega       Date:  2022-04-15
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.