Literature DB >> 18317819

Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Peter Politzer1, Jane S Murray, Monica C Concha.   

Abstract

Covalently bonded atoms, at least in Groups V-VII, may have regions of both positive and negative electrostatic potentials on their surfaces. The positive regions tend to be along the extensions of the bonds to these atoms; the origin of this can be explained in terms of the sigma-hole concept. It is thus possible for such an atom in one molecule to interact electrostatically with its counterpart in a second, identical molecule, forming a highly directional noncovalent bond. Several examples are presented and discussed. Such "like-like" interactions could not be understood in terms of atomic charges assigned by any of the usual procedures, which view a bonded atom as being entirely positive or negative.

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Year:  2008        PMID: 18317819     DOI: 10.1007/s00894-008-0280-5

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  11 in total

1.  Halogen Bonding versus Hydrogen Bonding in Driving Self-Assembly Processes Perfluorocarbon-hydrocarbon self-assembly, part IX. This work was supported by MURST (Cofinanziamento '99) and EU (COST-D12-0012). We thank Dr. A. Lunghi and Dr. P. Cardillo (Stazione Sperimentale Combustibili, S. Donato Milanese, Italy) for ARC experiments. Part VIII: ref. 9.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-05-15       Impact factor: 15.336

2.  Unusual halogen-bonded complex FBrdelta+...delta+BrF and hydrogen-bonded complex FBrdelta+...delta+HF formed by interactions between two positively charged atoms of different polar molecules.

Authors:  Fang-Fang Wang; Jian-Hua Hou; Zhi-Ru Li; Di Wu; Ying Li; Zhong-Yuan Lu; Wei-Liang Cao
Journal:  J Chem Phys       Date:  2007-04-14       Impact factor: 3.488

3.  Sigma-hole bonding: molecules containing group VI atoms.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Peter Politzer
Journal:  J Mol Model       Date:  2007-07-24       Impact factor: 1.810

4.  Molecular surface electrostatic potentials and anesthetic activity.

Authors:  Gavin Trogdon; Jane S Murray; Monica C Concha; Peter Politzer
Journal:  J Mol Model       Date:  2006-09-22       Impact factor: 1.810

5.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

6.  Quantitative evaluation of weak nonbonded Se...F interactions and their remarkable nature as orbital interactions.

Authors:  Michio Iwaoka; Hiroto Komatsu; Takayuki Katsuda; Shuji Tomoda
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

7.  Halogen bonds in biological molecules.

Authors:  Pascal Auffinger; Franklin A Hays; Eric Westhof; P Shing Ho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-19       Impact factor: 11.205

8.  The nature of the supramolecular association of 1,2,5-chalcogenadiazoles.

Authors:  Anthony F Cozzolino; Ignacio Vargas-Baca; Sarah Mansour; Amir H Mahmoudkhani
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

9.  Theoretical investigations on chalcogen-chalcogen interactions: what makes these nonbonded interactions bonding?

Authors:  Christian Bleiholder; Daniel B Werz; Horst Köppel; Rolf Gleiter
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

10.  Halogen bonding and the design of new materials: organic bromides, chlorides and perhaps even fluorides as donors.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2007-03-15       Impact factor: 1.810

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  59 in total

1.  Molecular mechanical perspective on halogen bonding.

Authors:  Mahmoud A A Ibrahim
Journal:  J Mol Model       Date:  2012-05-30       Impact factor: 1.810

2.  Mechanistic investigation of the base-promoted cycloselenoetherification of pent-4-en-1-ol.

Authors:  Marina D Rvovic; Vera M Divac; Ralph Puchta; Zorica M Bugarčić
Journal:  J Mol Model       Date:  2010-08-15       Impact factor: 1.810

3.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

4.  Tautomers and reference 3D-structures: the orphans of in silico drug design.

Authors:  Timothy Clark
Journal:  J Comput Aided Mol Des       Date:  2010-03-27       Impact factor: 3.686

5.  Theoretical investigations of the H···π and X (X = F, Cl, Br, I)···π complexes between hypohalous acids and benzene.

Authors:  Qiang Zhao; Dacheng Feng; Youmin Sun; Jingcheng Hao; Zhengting Cai
Journal:  J Mol Model       Date:  2010-12-01       Impact factor: 1.810

6.  Halogen bond tunability II: the varying roles of electrostatic and dispersion contributions to attraction in halogen bonds.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

7.  Non-covalent interactions - QTAIM and NBO analysis.

Authors:  Sławomir J Grabowski
Journal:  J Mol Model       Date:  2012-07-08       Impact factor: 1.810

8.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

9.  Treatment of Halogen Bonding in the OPLS-AA Force Field; Application to Potent Anti-HIV Agents.

Authors:  William L Jorgensen; Patric Schyman
Journal:  J Chem Theory Comput       Date:  2012-04-03       Impact factor: 6.006

10.  Discovery of σ-hole interactions involving ylides.

Authors:  Jiannan Ji; Yanli Zeng; Xueying Zhang; Shijun Zheng; Lingpeng Meng
Journal:  J Mol Model       Date:  2013-09-17       Impact factor: 1.810

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