Literature DB >> 18687900

The nonequilibrium mechanism for ultrasensitivity in a biological switch: sensing by Maxwell's demons.

Yuhai Tu1.   

Abstract

The Escherichia coli flagellar motor senses the intracellular concentration of the response regulator CheY-P and responds by varying the bias between its counterclockwise (CCW) and clockwise (CW) rotational states. The response is ultrasensitive with a large Hill coefficient (approximately 10). Recently, the detailed distribution functions of the CW and the CCW dwell times have been measured for different CW biases. Based on a general result on the properties of the dwell-time statistics for all equilibrium models, we show that the observed dwell-time statistics imply that the flagellar motor switch operates out of equilibrium, with energy dissipation. We propose a dissipative allosteric model that generates dwell-time statistics consistent with the experimental results. Our model reveals a general nonequilibrium mechanism for ultrasensitivity wherein the switch operates with a small energy expenditure to create high sensitivity. In contrast to the conventional equilibrium models, this mechanism does not require one to assume that CheY-P binds to the CCW and CW states with different affinities. The estimated energy consumption by the flagellar motor switch suggests that the transmembrane proton motive force, which drives the motor's rotation, may also power its switching. The existence of net transitional fluxes between microscopic states of the switch is predicted, measurement of these fluxes can test the nonequilibrium model directly. Both the results on the general properties of the dwell-time statistics and the mechanism for ultrasensitivity should be useful for understanding a diverse class of physical and biological systems.

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Year:  2008        PMID: 18687900      PMCID: PMC2575293          DOI: 10.1073/pnas.0804641105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Temperature dependence of switching of the bacterial flagellar motor by the protein CheY(13DK106YW).

Authors:  L Turner; A D Samuel; A S Stern; H C Berg
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

2.  Heightened sensitivity of a lattice of membrane receptors.

Authors:  T A Duke; D Bray
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

3.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

4.  Control of direction of flagellar rotation in bacterial chemotaxis.

Authors:  B E Scharf; K A Fahrner; L Turner; H C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-06       Impact factor: 11.205

5.  Temporal comparisons in bacterial chemotaxis.

Authors:  J E Segall; S M Block; H C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

6.  Receptor clustering as a cellular mechanism to control sensitivity.

Authors:  D Bray; M D Levin; C J Morton-Firth
Journal:  Nature       Date:  1998-05-07       Impact factor: 49.962

7.  Cooperation within actin filament in vertebrate skeletal muscle.

Authors:  R D Bremel; A Weber
Journal:  Nat New Biol       Date:  1972-07-26

8.  The steady-state counterclockwise/clockwise ratio of bacterial flagellar motors is regulated by protonmotive force.

Authors:  S Khan; R M Macnab
Journal:  J Mol Biol       Date:  1980-04-15       Impact factor: 5.469

9.  Abrupt changes in flagellar rotation observed by laser dark-field microscopy.

Authors:  S Kudo; Y Magariyama; S Aizawa
Journal:  Nature       Date:  1990-08-16       Impact factor: 49.962

10.  Response regulator output in bacterial chemotaxis.

Authors:  U Alon; L Camarena; M G Surette; B Aguera y Arcas; Y Liu; S Leibler; J B Stock
Journal:  EMBO J       Date:  1998-08-03       Impact factor: 11.598

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  43 in total

Review 1.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

2.  Stochastic coordination of multiple actuators reduces latency and improves chemotactic response in bacteria.

Authors:  Michael W Sneddon; William Pontius; Thierry Emonet
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

3.  Dynamics of the bacterial flagellar motor with multiple stators.

Authors:  Giovanni Meacci; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

Review 4.  Information processing in bacteria: memory, computation, and statistical physics: a key issues review.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  Rep Prog Phys       Date:  2016-04-08

5.  Switching dynamics of the bacterial flagellar motor near zero load.

Authors:  Fangbin Wang; Junhua Yuan; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-20       Impact factor: 11.205

6.  Torque-dependent remodeling of the bacterial flagellar motor.

Authors:  Navish Wadhwa; Rob Phillips; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-29       Impact factor: 11.205

7.  Thermodynamic Bounds on the Ultra- and Infra-affinity of Hsp70 for Its Substrates.

Authors:  Basile Nguyen; David Hartich; Udo Seifert; Paolo De Los Rios
Journal:  Biophys J       Date:  2017-07-25       Impact factor: 4.033

8.  Topological localization in out-of-equilibrium dissipative systems.

Authors:  Kinjal Dasbiswas; Kranthi K Mandadapu; Suriyanarayanan Vaikuntanathan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-11       Impact factor: 11.205

9.  Ultrasensitivity of an adaptive bacterial motor.

Authors:  Junhua Yuan; Howard C Berg
Journal:  J Mol Biol       Date:  2013-02-26       Impact factor: 5.469

10.  The switching dynamics of the bacterial flagellar motor.

Authors:  Siebe B van Albada; Sorin Tănase-Nicola; Pieter Rein ten Wolde
Journal:  Mol Syst Biol       Date:  2009-10-13       Impact factor: 11.429

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