Literature DB >> 19519137

Mutual information between input and output trajectories of biochemical networks.

Filipe Tostevin1, Pieter Rein ten Wolde.   

Abstract

Biochemical networks can respond to temporal characteristics of time-varying signals. To understand how reliably biochemical networks can transmit information we must consider how an input signal as a function of time--the input trajectory--can be mapped onto an output trajectory. Here we estimate the mutual information between input and output trajectories using a Gaussian model. We study how reliably the chemotaxis network of E. coli can transmit information on the ligand concentration to the flagellar motor, and find the input power spectrum that maximizes the information transmission rate.

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Year:  2009        PMID: 19519137     DOI: 10.1103/PhysRevLett.102.218101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  46 in total

1.  Information-optimal transcriptional response to oscillatory driving.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev Lett       Date:  2010-07-29       Impact factor: 9.161

2.  Decisions on the fly in cellular sensory systems.

Authors:  Eric D Siggia; Massimo Vergassola
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

Review 3.  Information processing in bacteria: memory, computation, and statistical physics: a key issues review.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  Rep Prog Phys       Date:  2016-04-08

4.  Dynamic Sampling and Information Encoding in Biochemical Networks.

Authors:  Garrett D Potter; Tommy A Byrd; Andrew Mugler; Bo Sun
Journal:  Biophys J       Date:  2017-02-28       Impact factor: 4.033

5.  Spectral solutions to stochastic models of gene expression with bursts and regulation.

Authors:  Andrew Mugler; Aleksandra M Walczak; Chris H Wiggins
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-10-20

6.  Maximally informative pairwise interactions in networks.

Authors:  Jeffrey D Fitzgerald; Tatyana O Sharpee
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-23

7.  Optimizing information flow in small genetic networks.

Authors:  Gasper Tkacik; Aleksandra M Walczak; William Bialek
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-29

8.  Quantitative modeling of Escherichia coli chemotactic motion in environments varying in space and time.

Authors:  Lili Jiang; Qi Ouyang; Yuhai Tu
Journal:  PLoS Comput Biol       Date:  2010-04-08       Impact factor: 4.475

9.  Nonadaptive fluctuation in an adaptive sensory system: bacterial chemoreceptor.

Authors:  Masatoshi Nishikawa; Tatsuo Shibata
Journal:  PLoS One       Date:  2010-06-29       Impact factor: 3.240

10.  Information processing and signal integration in bacterial quorum sensing.

Authors:  Pankaj Mehta; Sidhartha Goyal; Tao Long; Bonnie L Bassler; Ned S Wingreen
Journal:  Mol Syst Biol       Date:  2009-11-17       Impact factor: 11.429

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