Literature DB >> 23304402

Methods for identifying suicide or suicidal ideation in EHRs.

K Haerian1, H Salmasian, C Friedman.   

Abstract

Electronic health records contain important data elements for detection of novel adverse drug reactions, genotype/phenotype identification and psychosocial factor analysis, and the role of each of these as risk factors for suicidality warrants further investigation. Suicide and suicidal ideation are documented in clinical narratives. The specific purpose of this study was to define an algorithm for automated detection of this serious event. We found that ICD-9 E-Codes had the lowest positive predictive value: 0.55 (90% CI: 0.42-0.67), while combining ICD-9 and NLP had the best PPV: 0.97 (90% CI: 0.92-0.99). A qualitative analysis and classification of the types of errors by ICD-9 and NLP automated coding compared to manual review are also discussed.

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Mesh:

Year:  2012        PMID: 23304402      PMCID: PMC3540459     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  16 in total

Review 1.  A systematic review of validated methods for identifying suicide or suicidal ideation using administrative or claims data.

Authors:  James T Walkup; Lisa Townsend; Stephen Crystal; Mark Olfson
Journal:  Pharmacoepidemiol Drug Saf       Date:  2012-01       Impact factor: 2.890

2.  Data mining on electronic health record databases for signal detection in pharmacovigilance: which events to monitor?

Authors:  Gianluca Trifirò; Antoine Pariente; Preciosa M Coloma; Jan A Kors; Giovanni Polimeni; Ghada Miremont-Salamé; Maria Antonietta Catania; Francesco Salvo; Anaelle David; Nicholas Moore; Achille Patrizio Caputi; Miriam Sturkenboom; Mariam Molokhia; Julia Hippisley-Cox; Carlos Diaz Acedo; Johan van der Lei; Annie Fourrier-Reglat
Journal:  Pharmacoepidemiol Drug Saf       Date:  2009-12       Impact factor: 2.890

3.  Implementation of a suicide nomenclature within two VA healthcare settings.

Authors:  Lisa A Brenner; Ryan E Breshears; Lisa M Betthauser; Katherine K Bellon; Elizabeth Holman; Jeri E F Harwood; Morton M Silverman; Joe Huggins; Herbert T Nagamoto
Journal:  J Clin Psychol Med Settings       Date:  2011-06

4.  Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Authors:  Wendy W Chapman; Prakash M Nadkarni; Lynette Hirschman; Leonard W D'Avolio; Guergana K Savova; Ozlem Uzuner
Journal:  J Am Med Inform Assoc       Date:  2011 Sep-Oct       Impact factor: 4.497

5.  Portability of an algorithm to identify rheumatoid arthritis in electronic health records.

Authors:  Robert J Carroll; Will K Thompson; Anne E Eyler; Arthur M Mandelin; Tianxi Cai; Raquel M Zink; Jennifer A Pacheco; Chad S Boomershine; Thomas A Lasko; Hua Xu; Elizabeth W Karlson; Raul G Perez; Vivian S Gainer; Shawn N Murphy; Eric M Ruderman; Richard M Pope; Robert M Plenge; Abel Ngo Kho; Katherine P Liao; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2012-02-28       Impact factor: 4.497

Review 6.  Association between leukotriene-modifying agents and suicide: what is the evidence?

Authors:  Glen T Schumock; Todd A Lee; Min J Joo; Robert J Valuck; Leslie T Stayner; Robert D Gibbons
Journal:  Drug Saf       Date:  2011-07-01       Impact factor: 5.606

7.  ANK3, CACNA1C and ZNF804A gene variants in bipolar disorders and psychosis subphenotype.

Authors:  Tristram A P Lett; Clement C Zai; Arun K Tiwari; Sajid A Shaikh; Olga Likhodi; James L Kennedy; Daniel J Müller
Journal:  World J Biol Psychiatry       Date:  2011-07-18       Impact factor: 4.132

8.  Architectural requirements for a multipurpose natural language processor in the clinical environment.

Authors:  C Friedman; S B Johnson; B Forman; J Starren
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1995

9.  Epidemiology and short-term outcomes of injured medicare patients.

Authors:  David E Clark; Michael A DeLorenzo; F L Lucas; David E Wennberg
Journal:  J Am Geriatr Soc       Date:  2004-12       Impact factor: 5.562

Review 10.  What can natural language processing do for clinical decision support?

Authors:  Dina Demner-Fushman; Wendy W Chapman; Clement J McDonald
Journal:  J Biomed Inform       Date:  2009-08-13       Impact factor: 6.317

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  27 in total

1.  Which Chart Elements Accurately Identify Emergency Department Visits for Suicidal Ideation or Behavior?

Authors:  Sarah A Arias; Edwin D Boudreaux; Elizabeth Chen; Ivan Miller; Carlos A Camargo; Richard N Jones; Lisa Uebelacker
Journal:  Arch Suicide Res       Date:  2019-06-11

2.  Optimizing Corpus Creation for Training Word Embedding in Low Resource Domains: A Case Study in Autism Spectrum Disorder (ASD).

Authors:  Yang Gu; Gondy Leroy; Sydney Pettygrove; Maureen Kelly Galindo; Margaret Kurzius-Spencer
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

3.  Selection of Clinical Text Features for Classifying Suicide Attempts.

Authors:  Ryan S Buckland; Joseph W Hogan; Elizabeth S Chen
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

4.  Validation of an alcohol misuse classifier in hospitalized patients.

Authors:  Daniel To; Brihat Sharma; Niranjan Karnik; Cara Joyce; Dmitriy Dligach; Majid Afshar
Journal:  Alcohol       Date:  2019-09-28       Impact factor: 2.405

Review 5.  Overview of the First Natural Language Processing Challenge for Extracting Medication, Indication, and Adverse Drug Events from Electronic Health Record Notes (MADE 1.0).

Authors:  Abhyuday Jagannatha; Feifan Liu; Weisong Liu; Hong Yu
Journal:  Drug Saf       Date:  2019-01       Impact factor: 5.606

6.  Validating a strategy for psychosocial phenotyping using a large corpus of clinical text.

Authors:  Adi V Gundlapalli; Andrew Redd; Marjorie Carter; Guy Divita; Shuying Shen; Miland Palmer; Matthew H Samore
Journal:  J Am Med Inform Assoc       Date:  2013-10-29       Impact factor: 4.497

Review 7.  Natural Language Processing for EHR-Based Computational Phenotyping.

Authors:  Zexian Zeng; Yu Deng; Xiaoyu Li; Tristan Naumann; Yuan Luo
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-06-25       Impact factor: 3.710

8.  An evaluation of a natural language processing tool for identifying and encoding allergy information in emergency department clinical notes.

Authors:  Foster R Goss; Joseph M Plasek; Jason J Lau; Diane L Seger; Frank Y Chang; Li Zhou
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

9.  Detection of Suicidality in Adolescents with Autism Spectrum Disorders: Developing a Natural Language Processing Approach for Use in Electronic Health Records.

Authors:  Johnny Downs; Sumithra Velupillai; Gkotsis George; Rachel Holden; Maxim Kikoler; Harry Dean; Andrea Fernandes; Rina Dutta
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

10.  Bidirectional RNN for Medical Event Detection in Electronic Health Records.

Authors:  Abhyuday N Jagannatha; Hong Yu
Journal:  Proc Conf       Date:  2016-06
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