Literature DB >> 19683066

What can natural language processing do for clinical decision support?

Dina Demner-Fushman1, Wendy W Chapman, Clement J McDonald.   

Abstract

Computerized clinical decision support (CDS) aims to aid decision making of health care providers and the public by providing easily accessible health-related information at the point and time it is needed. natural language processing (NLP) is instrumental in using free-text information to drive CDS, representing clinical knowledge and CDS interventions in standardized formats, and leveraging clinical narrative. The early innovative NLP research of clinical narrative was followed by a period of stable research conducted at the major clinical centers and a shift of mainstream interest to biomedical NLP. This review primarily focuses on the recently renewed interest in development of fundamental NLP methods and advances in the NLP systems for CDS. The current solutions to challenges posed by distinct sublanguages, intended user groups, and support goals are discussed.

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Mesh:

Year:  2009        PMID: 19683066      PMCID: PMC2757540          DOI: 10.1016/j.jbi.2009.08.007

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  95 in total

1.  MediClass: A system for detecting and classifying encounter-based clinical events in any electronic medical record.

Authors:  Brian Hazlehurst; H Robert Frost; Dean F Sittig; Victor J Stevens
Journal:  J Am Med Inform Assoc       Date:  2005-05-19       Impact factor: 4.497

2.  Automatic generation of repeated patient information for tailoring clinical notes.

Authors:  Frank Meng; Ricky K Taira; Alex A T Bui; Hooshang Kangarloo; Bernard M Churchill
Journal:  Int J Med Inform       Date:  2005-08       Impact factor: 4.046

3.  Abbreviation and acronym disambiguation in clinical discourse.

Authors:  Sergeui Pakhomov; Ted Pedersen; Christopher G Chute
Journal:  AMIA Annu Symp Proc       Date:  2005

4.  Automating tissue bank annotation from pathology reports - comparison to a gold standard expert annotation set.

Authors:  Kaihong Liu; Kevin J Mitchell; Wendy W Chapman; Rebecca S Crowley
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Self-report and linguistic indicators of emotional expression in narratives as predictors of adjustment to cancer.

Authors:  Jason E Owen; Janine Giese-Davis; Matt Cordova; Carol Kronenwetter; Mitch Golant; David Spiegel
Journal:  J Behav Med       Date:  2006-07-15

6.  Natural language processing in the electronic medical record: assessing clinician adherence to tobacco treatment guidelines.

Authors:  Brian Hazlehurst; Dean F Sittig; Victor J Stevens; K Sabina Smith; Jack F Hollis; Thomas M Vogt; Jonathan P Winickoff; Russ Glasgow; Ted E Palen; Nancy A Rigotti
Journal:  Am J Prev Med       Date:  2005-12       Impact factor: 5.043

7.  Customization in a unified framework for summarizing medical literature.

Authors:  N Elhadad; M-Y Kan; J L Klavans; K R McKeown
Journal:  Artif Intell Med       Date:  2005-02       Impact factor: 5.326

8.  Detecting possible vaccination reactions in clinical notes.

Authors:  Brian Hazlehurst; John Mullooly; Allison Naleway; Brad Crane
Journal:  AMIA Annu Symp Proc       Date:  2005

9.  A controlled trial of automated classification of negation from clinical notes.

Authors:  Peter L Elkin; Steven H Brown; Brent A Bauer; Casey S Husser; William Carruth; Larry R Bergstrom; Dietlind L Wahner-Roedler
Journal:  BMC Med Inform Decis Mak       Date:  2005-05-05       Impact factor: 2.796

10.  Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors:  Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal:  BMC Med Inform Decis Mak       Date:  2006-07-26       Impact factor: 2.796

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  169 in total

1.  Part-of-speech tagging for clinical text: wall or bridge between institutions?

Authors:  Jung-wei Fan; Rashmi Prasad; Rommel M Yabut; Richard M Loomis; Daniel S Zisook; John E Mattison; Yang Huang
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

2.  Natural language processing and the oncologic history: is there a match?

Authors:  Jeremy L Warner; Peter Anick; Pengyu Hong; Nianwen Xue
Journal:  J Oncol Pract       Date:  2011-07       Impact factor: 3.840

3.  Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text.

Authors:  David Carrell; Bradley Malin; John Aberdeen; Samuel Bayer; Cheryl Clark; Ben Wellner; Lynette Hirschman
Journal:  J Am Med Inform Assoc       Date:  2012-07-06       Impact factor: 4.497

4.  Risk factor detection for heart disease by applying text analytics in electronic medical records.

Authors:  Manabu Torii; Jung-Wei Fan; Wei-Li Yang; Theodore Lee; Matthew T Wiley; Daniel S Zisook; Yang Huang
Journal:  J Biomed Inform       Date:  2015-08-14       Impact factor: 6.317

5.  Validation of Test Performance and Clinical Time Zero for an Electronic Health Record Embedded Severe Sepsis Alert.

Authors:  Joshua Rolnick; N Lance Downing; John Shepard; Weihan Chu; Julia Tam; Alexander Wessels; Ron Li; Brian Dietrich; Michael Rudy; Leon Castaneda; Lisa Shieh
Journal:  Appl Clin Inform       Date:  2016-06-22       Impact factor: 2.342

6.  Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus.

Authors:  Amber Stubbs; Özlem Uzuner
Journal:  J Biomed Inform       Date:  2015-08-28       Impact factor: 6.317

7.  Adapting existing natural language processing resources for cardiovascular risk factors identification in clinical notes.

Authors:  Abdulrahman Khalifa; Stéphane Meystre
Journal:  J Biomed Inform       Date:  2015-08-28       Impact factor: 6.317

8.  A study of active learning methods for named entity recognition in clinical text.

Authors:  Yukun Chen; Thomas A Lasko; Qiaozhu Mei; Joshua C Denny; Hua Xu
Journal:  J Biomed Inform       Date:  2015-09-15       Impact factor: 6.317

9.  A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision.

Authors:  Travis R Goodwin; Dina Demner-Fushman
Journal:  J Am Med Inform Assoc       Date:  2020-04-01       Impact factor: 4.497

10.  A Case-based Retrieval System using Natural Language Processing and Population-based Visualization.

Authors:  William Hsu; Ricky K Taira; Fernando Viñuela; Alex A T Bui
Journal:  Proc IEEE Int Conf Healthc Inform Imaging Syst Biol       Date:  2011-07
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