Literature DB >> 31574300

Validation of an alcohol misuse classifier in hospitalized patients.

Daniel To1, Brihat Sharma2, Niranjan Karnik3, Cara Joyce4, Dmitriy Dligach5, Majid Afshar6.   

Abstract

BACKGROUND: Current modes of identifying alcohol misuse in hospitalized patients rely on self-report questionnaires and diagnostic codes that have limitations, including low sensitivity. Information in the clinical notes of the electronic health record (EHR) may further augment the identification of alcohol misuse. Natural language processing (NLP) with supervised machine learning has been successful at analyzing clinical notes and identifying cases of alcohol misuse in trauma patients.
METHODS: An alcohol misuse NLP classifier, previously developed on trauma patients who completed the Alcohol Use Disorders Identification Test, was validated in a cohort of 1000 hospitalized patients at a large, tertiary health system between January 1, 2007 and September 1, 2017. The clinical notes were processed using the clinical Text Analysis and Knowledge Extraction System. The National Institute on Alcohol Abuse and Alcoholism (NIAAA) guidelines for alcohol misuse were used during annotation of the medical records in our validation dataset.
RESULTS: The alcohol misuse classifier had an area under the receiver operating characteristic curve of 0.91 (95% CI 0.90-0.93) in the cohort of hospitalized patients. The sensitivity, specificity, positive predictive value, and negative predictive value were 0.88 (95% CI 0.85-0.90), 0.78 (95% CI 0.74-0.82), 0.85 (95% CI 0.82-0.87), and 0.82 (95% CI 0.78-0.86), respectively. The Hosmer-Lemeshow Test (p = 0.13) demonstrates good model fit. Additionally, there was a dose-dependent response in alcohol consumption behaviors across increasing strata of predicted probabilities for alcohol misuse.
CONCLUSION: The alcohol misuse NLP classifier had good discrimination and test characteristics in hospitalized patients. An approach using the clinical notes with NLP and supervised machine learning may better identify alcohol misuse cases than conventional methods solely relying on billing diagnostic codes.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  alcohol use disorder; ethanol; machine learning; natural language processing; predictive value of tests

Mesh:

Year:  2019        PMID: 31574300      PMCID: PMC7101259          DOI: 10.1016/j.alcohol.2019.09.008

Source DB:  PubMed          Journal:  Alcohol        ISSN: 0741-8329            Impact factor:   2.405


  19 in total

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Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

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4.  Methods for identifying suicide or suicidal ideation in EHRs.

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5.  Automated Extraction of Substance Use Information from Clinical Texts.

Authors:  Yan Wang; Elizabeth S Chen; Serguei Pakhomov; Elliot Arsoniadis; Elizabeth W Carter; Elizabeth Lindemann; Indra Neil Sarkar; Genevieve B Melton
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6.  Prevalence and routine assessment of unhealthy alcohol use in hospitalized patients.

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Journal:  Eur J Intern Med       Date:  2010-05-20       Impact factor: 4.487

7.  Natural language processing and machine learning to identify alcohol misuse from the electronic health record in trauma patients: development and internal validation.

Authors:  Majid Afshar; Andrew Phillips; Niranjan Karnik; Jeanne Mueller; Daniel To; Richard Gonzalez; Ron Price; Richard Cooper; Cara Joyce; Dmitriy Dligach
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

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Review 9.  A review of approaches to identifying patient phenotype cohorts using electronic health records.

Authors:  Chaitanya Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J Embi; Noemie Elhadad; Stephen B Johnson; Albert M Lai
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10.  Can routine information from electronic patient records predict a future diagnosis of alcohol use disorder?

Authors:  Torgeir Gilje Lid; Geir Egil Eide; Ingvild Dalen; Eivind Meland
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7.  External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients.

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  7 in total

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