Literature DB >> 29854129

Detection of Suicidality in Adolescents with Autism Spectrum Disorders: Developing a Natural Language Processing Approach for Use in Electronic Health Records.

Johnny Downs1,2, Sumithra Velupillai1,3, Gkotsis George1, Rachel Holden1,4, Maxim Kikoler1,4, Harry Dean1, Andrea Fernandes1, Rina Dutta1,2.   

Abstract

Over 15% of young people with autism spectrum disorders (ASD) will contemplate or attempt suicide during adolescence. Yet, there is limited evidence concerning risk factors for suicidality in childhood ASD. Electronic health records (EHRs) can be used to create retrospective clinical cohort data for large samples of children with ASD. However systems to accurately extract suicidality-related concepts need to be developed so that putative models of suicide risk in ASD can be explored. We present a systematic approach to 1) adapt Natural Language Processing (NLP) solutions to screen with high sensitivity for reference to suicidal constructs in a large clinical ASD EHR corpus (230,465 documents), and 2) evaluate within a screened subset of 500 patients, the performance of an NLP classification tool for positive and negated suicidal mentions within clinical text. When evaluated, the NLP classification tool showed high system performance for positive suicidality with precision, recall, and F1 scores all > 0.85 at a document and patient level. The application therefore provides accurate output for epidemiological research into the factors contributing to the onset and recurrence of suicidality, and potential utility within clinical settings as an automated surveillance or risk prediction tool for specialist ASD services.

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Mesh:

Year:  2018        PMID: 29854129      PMCID: PMC5977628     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  17 in total

Review 1.  On mosaics and melting pots: conceptual considerations of comparison and matching strategies.

Authors:  Jacob A Burack; Grace Iarocci; Tara D Flanagan; Dermot M Bowler
Journal:  J Autism Dev Disord       Date:  2004-02

2.  Monitoring suicidal patients in primary care using electronic health records.

Authors:  Heather D Anderson; Wilson D Pace; Elias Brandt; Rodney D Nielsen; Richard R Allen; Anne M Libby; David R West; Robert J Valuck
Journal:  J Am Board Fam Med       Date:  2015 Jan-Feb       Impact factor: 2.657

3.  Methods for identifying suicide or suicidal ideation in EHRs.

Authors:  K Haerian; H Salmasian; C Friedman
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

4.  Predicting Suicidal Behavior From Longitudinal Electronic Health Records.

Authors:  Yuval Barak-Corren; Victor M Castro; Solomon Javitt; Alison G Hoffnagle; Yael Dai; Roy H Perlis; Matthew K Nock; Jordan W Smoller; Ben Y Reis
Journal:  Am J Psychiatry       Date:  2016-09-09       Impact factor: 18.112

5.  Suicide ideation and attempts in children with psychiatric disorders and typical development.

Authors:  Susan Dickerson Mayes; Susan L Calhoun; Raman Baweja; Fauzia Mahr
Journal:  Crisis       Date:  2015

6.  Psychiatric disorders in children with autism spectrum disorders: prevalence, comorbidity, and associated factors in a population-derived sample.

Authors:  Emily Simonoff; Andrew Pickles; Tony Charman; Susie Chandler; Tom Loucas; Gillian Baird
Journal:  J Am Acad Child Adolesc Psychiatry       Date:  2008-08       Impact factor: 8.829

7.  A replicated molecular genetic basis for subtyping antisocial behavior in children with attention-deficit/hyperactivity disorder.

Authors:  Avshalom Caspi; Kate Langley; Barry Milne; Terrie E Moffitt; Michael O'Donovan; Michael J Owen; Monica Polo Tomas; Richie Poulton; Michael Rutter; Alan Taylor; Benjamin Williams; Anita Thapar
Journal:  Arch Gen Psychiatry       Date:  2008-02

8.  Clinical predictors of antipsychotic use in children and adolescents with autism spectrum disorders: a historical open cohort study using electronic health records.

Authors:  Johnny Downs; Matthew Hotopf; Tamsin Ford; Emily Simonoff; Richard G Jackson; Hitesh Shetty; Robert Stewart; Richard D Hayes
Journal:  Eur Child Adolesc Psychiatry       Date:  2015-10-15       Impact factor: 4.785

9.  Linking health and education data to plan and evaluate services for children.

Authors:  Johnny Downs; Ruth Gilbert; Richard D Hayes; Matthew Hotopf; Tamsin Ford
Journal:  Arch Dis Child       Date:  2017-01-27       Impact factor: 3.791

10.  Cohort profile of the South London and Maudsley NHS Foundation Trust Biomedical Research Centre (SLaM BRC) Case Register: current status and recent enhancement of an Electronic Mental Health Record-derived data resource.

Authors:  Gayan Perera; Matthew Broadbent; Felicity Callard; Chin-Kuo Chang; Johnny Downs; Rina Dutta; Andrea Fernandes; Richard D Hayes; Max Henderson; Richard Jackson; Amelia Jewell; Giouliana Kadra; Ryan Little; Megan Pritchard; Hitesh Shetty; Alex Tulloch; Robert Stewart
Journal:  BMJ Open       Date:  2016-03-01       Impact factor: 2.692

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  12 in total

1.  Selection of Clinical Text Features for Classifying Suicide Attempts.

Authors:  Ryan S Buckland; Joseph W Hogan; Elizabeth S Chen
Journal:  AMIA Annu Symp Proc       Date:  2021-01-25

2.  Identifying Suicidal Ideation and Attempt From Clinical Notes Within a Large Integrated Health Care System.

Authors:  Fagen Xie; Deborah S Ling Grant; John Chang; Britta I Amundsen; Rulin C Hechter
Journal:  Perm J       Date:  2022-04-05

3.  Identification of suicidal behavior among psychiatrically hospitalized adolescents using natural language processing and machine learning of electronic health records.

Authors:  Nicholas J Carson; Brian Mullin; Maria Jose Sanchez; Frederick Lu; Kelly Yang; Michelle Menezes; Benjamin Lê Cook
Journal:  PLoS One       Date:  2019-02-19       Impact factor: 3.240

4.  Risk Assessment Tools and Data-Driven Approaches for Predicting and Preventing Suicidal Behavior.

Authors:  Sumithra Velupillai; Gergö Hadlaczky; Enrique Baca-Garcia; Genevieve M Gorrell; Nomi Werbeloff; Dong Nguyen; Rashmi Patel; Daniel Leightley; Johnny Downs; Matthew Hotopf; Rina Dutta
Journal:  Front Psychiatry       Date:  2019-02-13       Impact factor: 4.157

5.  Identifying and Predicting Intentional Self-Harm in Electronic Health Record Clinical Notes: Deep Learning Approach.

Authors:  Jihad S Obeid; Jennifer Dahne; Sean Christensen; Samuel Howard; Tami Crawford; Lewis J Frey; Tracy Stecker; Brian E Bunnell
Journal:  JMIR Med Inform       Date:  2020-07-30

Review 6.  Reviewing a Decade of Research Into Suicide and Related Behaviour Using the South London and Maudsley NHS Foundation Trust Clinical Record Interactive Search (CRIS) System.

Authors:  André Bittar; Sumithra Velupillai; Johnny Downs; Rosemary Sedgwick; Rina Dutta
Journal:  Front Psychiatry       Date:  2020-11-27       Impact factor: 4.157

Review 7.  The Role of New Technologies to Prevent Suicide in Adolescence: A Systematic Review of the Literature.

Authors:  Alberto Forte; Giuseppe Sarli; Lorenzo Polidori; David Lester; Maurizio Pompili
Journal:  Medicina (Kaunas)       Date:  2021-01-26       Impact factor: 2.430

8.  Using natural language processing to extract self-harm and suicidality data from a clinical sample of patients with eating disorders: a retrospective cohort study.

Authors:  Charlotte Cliffe; Aida Seyedsalehi; Katerina Vardavoulia; André Bittar; Sumithra Velupillai; Hitesh Shetty; Ulrike Schmidt; Rina Dutta
Journal:  BMJ Open       Date:  2021-12-31       Impact factor: 2.692

9.  Using clinical Natural Language Processing for health outcomes research: Overview and actionable suggestions for future advances.

Authors:  Sumithra Velupillai; Hanna Suominen; Maria Liakata; Angus Roberts; Anoop D Shah; Katherine Morley; David Osborn; Joseph Hayes; Robert Stewart; Johnny Downs; Wendy Chapman; Rina Dutta
Journal:  J Biomed Inform       Date:  2018-10-24       Impact factor: 6.317

10.  Developing a Natural Language Processing tool to identify perinatal self-harm in electronic healthcare records.

Authors:  Karyn Ayre; André Bittar; Joyce Kam; Somain Verma; Louise M Howard; Rina Dutta
Journal:  PLoS One       Date:  2021-08-04       Impact factor: 3.240

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