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Literature DB >> 21846785

Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions.

Wendy W Chapman, Prakash M Nadkarni, Lynette Hirschman, Leonard W D'Avolio, Guergana K Savova, Ozlem Uzuner.

Abstract

Mesh：

Year: 2011 PMID： 21846785 PMCID： PMC3168329 DOI： 10.1136/amiajnl-2011-000465

Source DB: PubMed Journal: J Am Med Inform Assoc ISSN： 1067-5027 Impact factor: 4.497

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12 in total

1. Extracting medication information from clinical text.

Authors: Ozlem Uzuner; Imre Solti; Eithon Cadag
Journal: J Am Med Inform Assoc Date: 2010 Sep-Oct Impact factor: 4.497

2. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors: Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal: J Am Med Inform Assoc Date: 2010 Sep-Oct Impact factor: 4.497

3. Closing the gap between NLP research and clinical practice.

Authors: W W Chapman
Journal: Methods Inf Med Date: 2010 Impact factor: 2.176

4. Evaluation of a generalizable approach to clinical information retrieval using the automated retrieval console (ARC).

Authors: Leonard W D'Avolio; Thien M Nguyen; Wildon R Farwell; Yongming Chen; Felicia Fitzmeyer; Owen M Harris; Louis D Fiore
Journal: J Am Med Inform Assoc Date: 2010 Jul-Aug Impact factor: 4.497

5. Evaluating the state-of-the-art in automatic de-identification.

Authors: Ozlem Uzuner; Yuan Luo; Peter Szolovits
Journal: J Am Med Inform Assoc Date: 2007-06-28 Impact factor: 4.497

Review 6. Natural language processing: an introduction.

Authors: Prakash M Nadkarni; Lucila Ohno-Machado; Wendy W Chapman
Journal: J Am Med Inform Assoc Date: 2011 Sep-Oct Impact factor: 4.497

Review 7. A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

Authors: John Moult
Journal: Curr Opin Struct Biol Date: 2005-06 Impact factor: 6.809

8. Identifying patient smoking status from medical discharge records.

Authors: Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal: J Am Med Inform Assoc Date: 2007-10-18 Impact factor: 4.497

9. Extracting principal diagnosis, co-morbidity and smoking status for asthma research: evaluation of a natural language processing system.

Authors: Qing T Zeng; Sergey Goryachev; Scott Weiss; Margarita Sordo; Shawn N Murphy; Ross Lazarus
Journal: BMC Med Inform Decis Mak Date: 2006-07-26 Impact factor: 2.796

10. Introducing meta-services for biomedical information extraction.

Authors: Florian Leitner; Martin Krallinger; Carlos Rodriguez-Penagos; Jörg Hakenberg; Conrad Plake; Cheng-Ju Kuo; Chun-Nan Hsu; Richard Tzong-Han Tsai; Hsi-Chuan Hung; William W Lau; Calvin A Johnson; Rune Saetre; Kazuhiro Yoshida; Yan Hua Chen; Sun Kim; Soo-Yong Shin; Byoung-Tak Zhang; William A Baumgartner; Lawrence Hunter; Barry Haddow; Michael Matthews; Xinglong Wang; Patrick Ruch; Frédéric Ehrler; Arzucan Ozgür; Güneş Erkan; Dragomir R Radev; Michael Krauthammer; ThaiBinh Luong; Robert Hoffmann; Chris Sander; Alfonso Valencia
Journal: Genome Biol Date: 2008-09-01 Impact factor: 13.583

101 in total

1. iDASH: integrating data for analysis, anonymization, and sharing.

Authors: Lucila Ohno-Machado; Vineet Bafna; Aziz A Boxwala; Brian E Chapman; Wendy W Chapman; Kamalika Chaudhuri; Michele E Day; Claudiu Farcas; Nathaniel D Heintzman; Xiaoqian Jiang; Hyeoneui Kim; Jihoon Kim; Michael E Matheny; Frederic S Resnic; Staal A Vinterbo
Journal: J Am Med Inform Assoc Date: 2011-11-10 Impact factor: 4.497

2. Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text.

Authors: David Carrell; Bradley Malin; John Aberdeen; Samuel Bayer; Cheryl Clark; Ben Wellner; Lynette Hirschman
Journal: J Am Med Inform Assoc Date: 2012-07-06 Impact factor: 4.497

Review 3. Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2.

Authors: Amber Stubbs; Christopher Kotfila; Hua Xu; Özlem Uzuner
Journal: J Biomed Inform Date: 2015-07-22 Impact factor: 6.317

4. Adapting existing natural language processing resources for cardiovascular risk factors identification in clinical notes.

Authors: Abdulrahman Khalifa; Stéphane Meystre
Journal: J Biomed Inform Date: 2015-08-28 Impact factor: 6.317