Literature DB >> 23304354

OPIC: Ontology-driven Patient Information Capturing system for epilepsy.

Satya S Sahoo1, Meng Zhao, Lingyun Luo, Alireza Bozorgi, Deepak Gupta, Samden D Lhatoo, Guo-Qiang Zhang.   

Abstract

The widespread use of paper or document-based forms for capturing patient information in various clinical settings, for example in epilepsy centers, is a critical barrier for large-scale, multi-center research studies that require interoperable, consistent, and error-free data collection. This challenge can be addressed by a web-accessible and flexible patient data capture system that is supported by a common terminological system to facilitate data re-usability, sharing, and integration. We present OPIC, an Ontology-driven Patient Information Capture (OPIC) system that uses a domain-specific epilepsy and seizure ontology (EpSO) to (1) support structured entry of multi-modal epilepsy data, (2) proactively ensure quality of data through use of ontology terms in drop-down menus, and (3) identify and index clinically relevant ontology terms in free-text fields to improve accuracy of subsequent analytical queries (e.g. cohort identification). EpSO, modeled using the Web Ontology Language (OWL), conforms to the recommendations of the International League Against Epilepsy (ILAE) classification and terminological commission. OPIC has been developed using agile software engineering methodology for rapid development cycles in close collaboration with domain expert and end users. We report the result from the initial deployment of OPIC at the University Hospitals Case Medical Center (UH CMC) epilepsy monitoring unit (EMU) as part of the NIH-funded project on Sudden Unexpected Death in Epilepsy (SUDEP). Preliminary user evaluation shows that OPIC has achieved its design objectives to be an intuitive patient information capturing system that also reduces the potential for data entry errors and variability in use of epilepsy terms.

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Year:  2012        PMID: 23304354      PMCID: PMC3540561     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  16 in total

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Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

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Journal:  Artif Intell Med       Date:  2007-01-22       Impact factor: 5.326

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7.  An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.

Authors:  Satya S Sahoo; Olivier Bodenreider; Joni L Rutter; Karen J Skinner; Amit P Sheth
Journal:  J Biomed Inform       Date:  2008-02-29       Impact factor: 6.317

8.  Proposal for revised classification of epilepsies and epileptic syndromes. Commission on Classification and Terminology of the International League Against Epilepsy.

Authors: 
Journal:  Epilepsia       Date:  1989 Jul-Aug       Impact factor: 5.864

9.  From classification to epilepsy ontology and informatics.

Authors:  Guo-Qiang Zhang; Satya S Sahoo; Samden D Lhatoo
Journal:  Epilepsia       Date:  2012-07       Impact factor: 5.864

10.  Proposal for revised clinical and electroencephalographic classification of epileptic seizures. From the Commission on Classification and Terminology of the International League Against Epilepsy.

Authors: 
Journal:  Epilepsia       Date:  1981-08       Impact factor: 5.864

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  13 in total

1.  ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research.

Authors:  Licong Cui; Yan Huang; Shiqiang Tao; Samden D Lhatoo; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  An integrated, ontology-driven approach to constructing observational databases for research.

Authors:  William Hsu; Nestor R Gonzalez; Aichi Chien; J Pablo Villablanca; Päivi Pajukanta; Fernando Viñuela; Alex A T Bui
Journal:  J Biomed Inform       Date:  2015-03-26       Impact factor: 6.317

3.  Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories.

Authors:  Shiqiang Tao; Licong Cui; Xi Wu; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

4.  MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System.

Authors:  Guo-Qiang Zhang; Licong Cui; Samden Lhatoo; Stephan U Schuele; Satya S Sahoo
Journal:  AMIA Annu Symp Proc       Date:  2014-11-14

5.  DaT3M: A Data Tracker for Multi-faceted Management of Multi-site Clinical Research Data Submission, Curation, Master Inventorying, and Sharing.

Authors:  Shiqiang Tao; Licong Cui; Wei-Chun Chou; Samden Lhatoo; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2022-05-23

6.  Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care.

Authors:  Satya S Sahoo; Samden D Lhatoo; Deepak K Gupta; Licong Cui; Meng Zhao; Catherine Jayapandian; Alireza Bozorgi; Guo-Qiang Zhang
Journal:  J Am Med Inform Assoc       Date:  2013-05-18       Impact factor: 4.497

7.  Insight: Semantic Provenance and Analysis Platform for Multi-center Neurology Healthcare Research.

Authors:  Priya Ramesh; Annan Wei; Elisabeth Welter; Yvan Bamps; Shelley Stoll; Ashley Bukach; Martha Sajatovic; Satya S Sahoo
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2015-11

8.  Electrophysiological signal analysis and visualization using Cloudwave for epilepsy clinical research.

Authors:  Catherine P Jayapandian; Chien-Hung Chen; Alireza Bozorgi; Samden D Lhatoo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  Stud Health Technol Inform       Date:  2013

Review 9.  Epilepsy informatics and an ontology-driven infrastructure for large database research and patient care in epilepsy.

Authors:  Satya S Sahoo; Guo-Qiang Zhang; Samden D Lhatoo
Journal:  Epilepsia       Date:  2013-05-03       Impact factor: 5.864

10.  A scalable neuroinformatics data flow for electrophysiological signals using MapReduce.

Authors:  Catherine Jayapandian; Annan Wei; Priya Ramesh; Bilal Zonjy; Samden D Lhatoo; Kenneth Loparo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  Front Neuroinform       Date:  2015-03-16       Impact factor: 4.081

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