Literature DB >> 28269839

ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research.

Licong Cui1, Yan Huang1, Shiqiang Tao2, Samden D Lhatoo2, Guo-Qiang Zhang3.   

Abstract

Sudden Unexpected Death in Epilepsy (SUDEP) is the leading mode of epilepsy-related death. The Center for SUDEP Research (CSR) is an NINDS-funded Center Without Wall's initiative aimed at prospectively creating a comprehensive clinical research resource for SUDEP. This resource consists of a growing set of data and biological samples of a statistically significant cohort of patients at an elevated risk, best represented by the Epilepsy Monitoring Unit (EMU) patient population. The Informatics and Data Analytics Core (IDAC) of CSR has developed a state-of-the- art informatics infrastructure, to integrate patient data captured in multiple EMU's at a greatly accelerated pace. Data quality assurance is a priority of IDAC. This paper reports our approach, Ontology-guided Data Curation for Multisite Clinical Research Data Integration (ODaCCI), to address the challenging task of centralized data curation while new data is continuously generated and integrated from distributed sites. ODaCCI leverages the Epilepsy and Seizure Ontology not only for upstream data capture, but also for supporting a range of quality assurance tasks such as data quality monitoring, data update, and data reports. Between October 2014 and February 2016, ODaCCI has integrated phenotypic and electroencephalogram signal data of 629 patients from 7 clinical sites, while supporting continuous and asynchronous data quality enhancement overtime.

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Mesh:

Year:  2017        PMID: 28269839      PMCID: PMC5333343     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  21 in total

1.  Analysis of data errors in clinical research databases.

Authors:  Saveli I Goldberg; Andrzej Niemierko; Alexander Turchin
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

2.  The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.

Authors:  Griffin M Weber; Shawn N Murphy; Andrew J McMurry; Douglas Macfadden; Daniel J Nigrin; Susanne Churchill; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2009-06-30       Impact factor: 4.497

3.  A Data Quality Ontology for the Secondary Use of EHR Data.

Authors:  Steven G Johnson; Stuart Speedie; Gyorgy Simon; Vipin Kumar; Bonnie L Westra
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

4.  Sudden unexpected death in epilepsy: assessing the public health burden.

Authors:  David J Thurman; Dale C Hesdorffer; Jacqueline A French
Journal:  Epilepsia       Date:  2014-06-05       Impact factor: 5.864

5.  A pragmatic framework for single-site and multisite data quality assessment in electronic health record-based clinical research.

Authors:  Michael G Kahn; Marsha A Raebel; Jason M Glanz; Karen Riedlinger; John F Steiner
Journal:  Med Care       Date:  2012-07       Impact factor: 2.983

Review 6.  Sudden unexpected death in epilepsy: Identifying risk and preventing mortality.

Authors:  Samden Lhatoo; Jeffrey Noebels; Vicky Whittemore
Journal:  Epilepsia       Date:  2015-10-23       Impact factor: 5.864

7.  Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care.

Authors:  Satya S Sahoo; Samden D Lhatoo; Deepak K Gupta; Licong Cui; Meng Zhao; Catherine Jayapandian; Alireza Bozorgi; Guo-Qiang Zhang
Journal:  J Am Med Inform Assoc       Date:  2013-05-18       Impact factor: 4.497

8.  Complex epilepsy phenotype extraction from narrative clinical discharge summaries.

Authors:  Licong Cui; Satya S Sahoo; Samden D Lhatoo; Gaurav Garg; Prashant Rai; Alireza Bozorgi; Guo-Qiang Zhang
Journal:  J Biomed Inform       Date:  2014-06-26       Impact factor: 6.317

9.  Ontology-based federated data access to human studies information.

Authors:  Ida Sim; Simona Carini; Samson W Tu; Landon T Detwiler; James Brinkley; Shamim A Mollah; Karl Burke; Harold P Lehmann; Swati Chakraborty; Knut M Wittkowski; Brad H Pollock; Thomas M Johnson; Vojtech Huser
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

10.  EpiDEA: extracting structured epilepsy and seizure information from patient discharge summaries for cohort identification.

Authors:  Licong Cui; Alireza Bozorgi; Samden D Lhatoo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03
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  2 in total

1.  Can Big Data guide prognosis and clinical decisions in epilepsy?

Authors:  Xiaojin Li; Licong Cui; Guo-Qiang Zhang; Samden D Lhatoo
Journal:  Epilepsia       Date:  2021-02-02       Impact factor: 5.864

2.  The National Sleep Research Resource: towards a sleep data commons.

Authors:  Guo-Qiang Zhang; Licong Cui; Remo Mueller; Shiqiang Tao; Matthew Kim; Michael Rueschman; Sara Mariani; Daniel Mobley; Susan Redline
Journal:  J Am Med Inform Assoc       Date:  2018-10-01       Impact factor: 4.497

  2 in total

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