Literature DB >> 27069752

Insight: Semantic Provenance and Analysis Platform for Multi-center Neurology Healthcare Research.

Priya Ramesh1, Annan Wei1, Elisabeth Welter2, Yvan Bamps3, Shelley Stoll4, Ashley Bukach2, Martha Sajatovic2, Satya S Sahoo1.   

Abstract

Insight is a Semantic Web technology-based platform to support large-scale secondary analysis of healthcare data for neurology clinical research. Insight features the novel use of: (1) provenance metadata, which describes the history or origin of patient data, in clinical research analysis, and (2) support for patient cohort queries across multiple institutions conducting research in epilepsy, which is the one of the most common neurological disorders affecting 50 million persons worldwide. Insight is being developed as a healthcare informatics infrastructure to support a national network of eight epilepsy research centers across the U.S. funded by the U.S. Centers for Disease Control and Prevention (CDC). This paper describes the use of the World Wide Web Consortium (W3C) PROV recommendation for provenance metadata that allows researchers to create patient cohorts based on the provenance of the research studies. In addition, the paper describes the use of descriptive logic-based OWL2 epilepsy ontology for cohort queries with "expansion of query expression" using ontology reasoning. Finally, the evaluation results for the data integration and query performance are described using data from three research studies with 180 epilepsy patients. The experiment results demonstrate that Insight is a scalable approach to use Semantic provenance metadata for context-based data analysis in healthcare informatics.

Entities:  

Keywords:  Ontology streaming; Provenance metadata; Semantic integration of healthcare data

Year:  2015        PMID: 27069752      PMCID: PMC4826045          DOI: 10.1109/BIBM.2015.7359776

Source DB:  PubMed          Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)        ISSN: 2156-1125


  14 in total

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Authors:  Cornelius Rosse; José L V Mejino
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

Review 2.  Formal representation of eligibility criteria: a literature review.

Authors:  Chunhua Weng; Samson W Tu; Ida Sim; Rachel Richesson
Journal:  J Biomed Inform       Date:  2009-12-23       Impact factor: 6.317

3.  PEARLS depression treatment for individuals with epilepsy: a randomized controlled trial.

Authors:  Paul Ciechanowski; Naomi Chaytor; John Miller; Robert Fraser; Joan Russo; Jurgen Unutzer; Frank Gilliam
Journal:  Epilepsy Behav       Date:  2010-07-06       Impact factor: 2.937

4.  Managing information well: Toward an ontology-driven informatics platform for data sharing and secondary use in epilepsy self-management research centers.

Authors:  Satya S Sahoo; Guo-Qiang Zhang; Yvan Bamps; Robert Fraser; Shelley Stoll; Samden D Lhatoo; Curtis Tatsuoka; Johnny Sams; Elisabeth Welter; Martha Sajatovic
Journal:  Health Informatics J       Date:  2015-03-13       Impact factor: 2.681

5.  Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care.

Authors:  Satya S Sahoo; Samden D Lhatoo; Deepak K Gupta; Licong Cui; Meng Zhao; Catherine Jayapandian; Alireza Bozorgi; Guo-Qiang Zhang
Journal:  J Am Med Inform Assoc       Date:  2013-05-18       Impact factor: 4.497

Review 6.  Surveillance of epilepsy and prevention of epilepsy and its sequelae: lessons from the Institute of Medicine report.

Authors:  Dale C Hesdorffer; Charles E Begley
Journal:  Curr Opin Neurol       Date:  2013-04       Impact factor: 5.710

7.  Electrophysiological signal analysis and visualization using Cloudwave for epilepsy clinical research.

Authors:  Catherine P Jayapandian; Chien-Hung Chen; Alireza Bozorgi; Samden D Lhatoo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  Stud Health Technol Inform       Date:  2013

8.  EpiDEA: extracting structured epilepsy and seizure information from patient discharge summaries for cohort identification.

Authors:  Licong Cui; Alireza Bozorgi; Samden D Lhatoo; Guo-Qiang Zhang; Satya S Sahoo
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

Review 9.  The BRAIN Initiative: developing technology to catalyse neuroscience discovery.

Authors:  Lyric A Jorgenson; William T Newsome; David J Anderson; Cornelia I Bargmann; Emery N Brown; Karl Deisseroth; John P Donoghue; Kathy L Hudson; Geoffrey S F Ling; Peter R MacLeish; Eve Marder; Richard A Normann; Joshua R Sanes; Mark J Schnitzer; Terrence J Sejnowski; David W Tank; Roger Y Tsien; Kamil Ugurbil; John C Wingfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-05-19       Impact factor: 6.237

10.  WebEase: development of a Web-based epilepsy self-management intervention.

Authors:  Colleen DiIorio; Cam Escoffery; Katherine A Yeager; Frances McCarty; Thomas R Henry; Archana Koganti; Elizabeth Reisinger; Elise Robinson; Rosemarie Kobau; Patricia Price
Journal:  Prev Chronic Dis       Date:  2008-12-15       Impact factor: 2.830

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  2 in total

1.  Self-management for adults with epilepsy: Aggregate Managing Epilepsy Well Network findings on depressive symptoms.

Authors:  Martha Sajatovic; Erica K Johnson; Robert T Fraser; Kristin A Cassidy; Hongyan Liu; Dilip K Pandey; Rakale C Quarells; Peter Scal; Samantha Schmidt; Ross Shegog; Tanya M Spruill; Mary R Janevic; Curtis Tatsuoka; Barbara C Jobst
Journal:  Epilepsia       Date:  2019-09-05       Impact factor: 5.864

2.  Correlates of quality of life among individuals with epilepsy enrolled in self-management research: From the US Centers for Disease Control and Prevention Managing Epilepsy Well Network.

Authors:  Martha Sajatovic; Curtis Tatsuoka; Elisabeth Welter; Daniel Friedman; Tanya M Spruill; Shelley Stoll; Satya S Sahoo; Ashley Bukach; Yvan A Bamps; Joshua Valdez; Barbara C Jobst
Journal:  Epilepsy Behav       Date:  2017-01-27       Impact factor: 2.937

  2 in total

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