Literature DB >> 23148581

Increased selectivity toward cytoplasmic versus mitochondrial ribosome confers improved efficiency of synthetic aminoglycosides in fixing damaged genes: a strategy for treatment of genetic diseases caused by nonsense mutations.

Jeyakumar Kandasamy1, Dana Atia-Glikin, Eli Shulman, Katya Shapira, Michal Shavit, Valery Belakhov, Timor Baasov.   

Abstract

Compelling evidence is now available that gentamicin and Geneticin (G418) can induce the mammalian ribosome to suppress disease-causing nonsense mutations and partially restore the expression of functional proteins. However, toxicity and relative lack of efficacy at subtoxic doses limit the use of gentamicin for suppression therapy. Although G418 exhibits the strongest activity, it is very cytotoxic even at low doses. We describe here the first systematic development of the novel aminoglycoside (S)-11 exhibiting similar in vitro and ex vivo activity to that of G418, while its cell toxicity is significantly lower than those of gentamicin and G418. Using a series of biochemical assays, we provide proof of principle that antibacterial activity and toxicity of aminoglycosides can be dissected from their suppression activity. The data further indicate that the increased specificity toward cytoplasmic ribosome correlates with the increased activity and that the decreased specificity toward mitochondrial ribosome confers the lowered cytotoxicity.

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Year:  2012        PMID: 23148581      PMCID: PMC3542475          DOI: 10.1021/jm3012992

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  36 in total

1.  Structural basis for selectivity and toxicity of ribosomal antibiotics.

Authors:  E C Böttger; B Springer; T Prammananan; Y Kidan; P Sander
Journal:  EMBO Rep       Date:  2001-04       Impact factor: 8.807

2.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

3.  Comparison of cytotoxicity of aminoglycoside antibiotics using a panel cellular biotest system.

Authors:  V G Chernikov; S M Terekhov; T B Krokhina; S S Shishkin; T D Smirnova; E A Kalashnikova; N V Adnoral; L B Rebrov; Yu I Denisov-Nikol'skii; V A Bykov
Journal:  Bull Exp Biol Med       Date:  2003-01       Impact factor: 0.804

4.  Isolation and incubation conditions to study heart mitochondrial protein synthesis.

Authors:  E E McKee; B L Grier; G S Thompson; J D McCourt
Journal:  Am J Physiol       Date:  1990-03

5.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

6.  A meta-analysis of nonsense mutations causing human genetic disease.

Authors:  Matthew Mort; Dobril Ivanov; David N Cooper; Nadia A Chuzhanova
Journal:  Hum Mutat       Date:  2008-08       Impact factor: 4.878

Review 7.  Designer aminoglycosides: the race to develop improved antibiotics and compounds for the treatment of human genetic diseases.

Authors:  Mariana Hainrichson; Igor Nudelman; Timor Baasov
Journal:  Org Biomol Chem       Date:  2007-10-09       Impact factor: 3.876

8.  Differential selectivity of natural and synthetic aminoglycosides towards the eukaryotic and prokaryotic decoding A sites.

Authors:  Jiro Kondo; Mariana Hainrichson; Igor Nudelman; Dalia Shallom-Shezifi; Christopher M Barbieri; Daniel S Pilch; Eric Westhof; Timor Baasov
Journal:  Chembiochem       Date:  2007-09-24       Impact factor: 3.164

9.  Suppression of a nonsense mutation in mammalian cells in vivo by the aminoglycoside antibiotics G-418 and paromomycin.

Authors:  J F Burke; A E Mogg
Journal:  Nucleic Acids Res       Date:  1985-09-11       Impact factor: 16.971

10.  Mitochondrial deafness alleles confer misreading of the genetic code.

Authors:  Sven N Hobbie; Christian M Bruell; Subramanian Akshay; Sarath K Kalapala; Dmitry Shcherbakov; Erik C Böttger
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-28       Impact factor: 11.205

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  29 in total

1.  Characterization of new-generation aminoglycoside promoting premature termination codon readthrough in cancer cells.

Authors:  Laure Bidou; Olivier Bugaud; Valery Belakhov; Timor Baasov; Olivier Namy
Journal:  RNA Biol       Date:  2017-02-01       Impact factor: 4.652

2.  N6', N6''', and O4' Modifications to Neomycin Affect Ribosomal Selectivity without Compromising Antibacterial Activity.

Authors:  Girish C Sati; Dimitri Shcherbakov; Sven N Hobbie; Andrea Vasella; Erik C Böttger; David Crich
Journal:  ACS Infect Dis       Date:  2017-04-06       Impact factor: 5.084

3.  When Proteins Start to Make Sense: Fine-tuning Aminoglycosides for PTC Suppression Therapy.

Authors:  Moran Shalev; Timor Baasov
Journal:  Medchemcomm       Date:  2014-08-01       Impact factor: 3.597

Review 4.  Comprehensive review of chemical strategies for the preparation of new aminoglycosides and their biological activities.

Authors:  Nishad Thamban Chandrika; Sylvie Garneau-Tsodikova
Journal:  Chem Soc Rev       Date:  2018-02-19       Impact factor: 54.564

5.  Synthetic aminoglycosides efficiently suppress cystic fibrosis transmembrane conductance regulator nonsense mutations and are enhanced by ivacaftor.

Authors:  Xiaojiao Xue; Venkateshwar Mutyam; Liping Tang; Silpak Biswas; Ming Du; Laura A Jackson; Yanying Dai; Valery Belakhov; Moran Shalev; Fuquan Chen; Jochen Schacht; Robert J Bridges; Timor Baasov; Jeong Hong; David M Bedwell; Steven M Rowe
Journal:  Am J Respir Cell Mol Biol       Date:  2014-04       Impact factor: 6.914

6.  New inducible genetic method reveals critical roles of GABA in the control of feeding and metabolism.

Authors:  Fantao Meng; Yong Han; Dollada Srisai; Valery Belakhov; Monica Farias; Yong Xu; Richard D Palmiter; Timor Baasov; Qi Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

7.  Design of Novel Aminoglycoside Derivatives with Enhanced Suppression of Diseases-Causing Nonsense Mutations.

Authors:  Narayana Murthy Sabbavarapu; Michal Shavit; Yarden Degani; Boris Smolkin; Valery Belakhov; Timor Baasov
Journal:  ACS Med Chem Lett       Date:  2016-02-08       Impact factor: 4.345

8.  Identification of the molecular attributes required for aminoglycoside activity against Leishmania.

Authors:  Moran Shalev; Jiro Kondo; Dmitry Kopelyanskiy; Charles L Jaffe; Noam Adir; Timor Baasov
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-29       Impact factor: 11.205

Review 9.  Pharmacological approaches for targeting cystic fibrosis nonsense mutations.

Authors:  Jyoti Sharma; Kim M Keeling; Steven M Rowe
Journal:  Eur J Med Chem       Date:  2020-05-21       Impact factor: 6.514

10.  Designer aminoglycosides that selectively inhibit cytoplasmic rather than mitochondrial ribosomes show decreased ototoxicity: a strategy for the treatment of genetic diseases.

Authors:  Eli Shulman; Valery Belakhov; Gao Wei; Ann Kendall; Esther G Meyron-Holtz; Dorit Ben-Shachar; Jochen Schacht; Timor Baasov
Journal:  J Biol Chem       Date:  2013-12-03       Impact factor: 5.157

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