Literature DB >> 25147726

When Proteins Start to Make Sense: Fine-tuning Aminoglycosides for PTC Suppression Therapy.

Moran Shalev1, Timor Baasov1.   

Abstract

Aminoglycosides (AGs) are highly potent antibacterial agents, which are known to exert their deleterious effects on bacterial cells by interfering with the translation process, leading to aberrant protein synthesis that usually results in cell death. Nearly 45 years ago, AGs were shown to induce read-through activity in prokaryotic systems by selectively encoding tRNA molecules at premature termination codon (PTC) positions; resulting in the generation of full length functional proteins. However, only in the last 20 years this ability has been demonstrated in eukaryotic systems, highlighting their potential as therapeutic agents to treat PTC induced genetic disorders. Despite the great potential, AGs use in these manners is quite restricted due to relatively high toxicity values observed upon their administration. Over the last few years several synthetic derivatives were developed to overcome some of the enhanced toxicity issues, while in parallel showed significantly improved PTC suppression activity in various in-vitro, ex-vivo and in-vivo models of a variety of different diseases models underling by PTC mutations. Although these derivatives hold great promise to serve as therapeutic candidates they also demonstrate the necessity to further understand the molecular mechanisms of which AGs confer their biological activity in eukaryotic cells for further rational drug design. Recent achievements in structural research shed light on AGs mechanism of action and opened a new avenue in the development of new and improved therapeutic derivatives. The following manuscript highlights these accomplishments and summarizes their contributions to the state of art rational drug design.

Entities:  

Year:  2014        PMID: 25147726      PMCID: PMC4136519          DOI: 10.1039/C4MD00081A

Source DB:  PubMed          Journal:  Medchemcomm        ISSN: 2040-2503            Impact factor:   3.597


  112 in total

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Authors:  Cheryl Y Gregory-Evans; Xia Wang; Kishor M Wasan; Jinying Zhao; Andrew L Metcalfe; Kevin Gregory-Evans
Journal:  J Clin Invest       Date:  2013-12-20       Impact factor: 14.808

3.  The designer aminoglycoside NB84 significantly reduces glycosaminoglycan accumulation associated with MPS I-H in the Idua-W392X mouse.

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Journal:  Mol Genet Metab       Date:  2011-10-19       Impact factor: 4.797

4.  Mutations to nonsense codons in human genetic disease: implications for gene therapy by nonsense suppressor tRNAs.

Authors:  J Atkinson; R Martin
Journal:  Nucleic Acids Res       Date:  1994-04-25       Impact factor: 16.971

5.  Aminoglycoside antibiotics mediate context-dependent suppression of termination codons in a mammalian translation system.

Authors:  M Manuvakhova; K Keeling; D M Bedwell
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

6.  Repairing faulty genes by aminoglycosides: development of new derivatives of geneticin (G418) with enhanced suppression of diseases-causing nonsense mutations.

Authors:  Igor Nudelman; Dana Glikin; Boris Smolkin; Mariana Hainrichson; Valery Belakhov; Timor Baasov
Journal:  Bioorg Med Chem       Date:  2010-03-27       Impact factor: 3.641

Review 7.  Pharmacologic therapy for stop mutations: how much CFTR activity is enough?

Authors:  Eitan Kerem
Journal:  Curr Opin Pulm Med       Date:  2004-11       Impact factor: 3.155

8.  Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production.

Authors:  M L Zapp; S Stern; M R Green
Journal:  Cell       Date:  1993-09-24       Impact factor: 41.582

9.  Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.

Authors:  Maria A Borovinskaya; Raj D Pai; Wen Zhang; Barbara S Schuwirth; James M Holton; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H Doudna Cate
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

10.  Subcutaneous administration of TC007 reduces disease severity in an animal model of SMA.

Authors:  Virginia B Mattis; Marina Y Fosso; Cheng-Wei Chang; Christian L Lorson
Journal:  BMC Neurosci       Date:  2009-11-30       Impact factor: 3.288

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  18 in total

1.  Characterization of new-generation aminoglycoside promoting premature termination codon readthrough in cancer cells.

Authors:  Laure Bidou; Olivier Bugaud; Valery Belakhov; Timor Baasov; Olivier Namy
Journal:  RNA Biol       Date:  2017-02-01       Impact factor: 4.652

2.  Detection and Quantification of Ribosome Inhibition by Aminoglycoside Antibiotics in Living Bacteria Using an Orthogonal Ribosome-Controlled Fluorescent Reporter.

Authors:  Shijie Huang; Xuechen Zhu; Charles E Melançon
Journal:  ACS Chem Biol       Date:  2015-11-04       Impact factor: 5.100

3.  Synthesis of Gentamicin Minor Components: Gentamicin B1 and Gentamicin X2.

Authors:  Parasuraman Rajasekaran; David Crich
Journal:  Org Lett       Date:  2020-04-28       Impact factor: 6.005

Review 4.  Nonsense-mediated mRNA decay in humans at a glance.

Authors:  Tatsuaki Kurosaki; Lynne E Maquat
Journal:  J Cell Sci       Date:  2016-01-19       Impact factor: 5.285

5.  New inducible genetic method reveals critical roles of GABA in the control of feeding and metabolism.

Authors:  Fantao Meng; Yong Han; Dollada Srisai; Valery Belakhov; Monica Farias; Yong Xu; Richard D Palmiter; Timor Baasov; Qi Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-14       Impact factor: 11.205

6.  Design of Novel Aminoglycoside Derivatives with Enhanced Suppression of Diseases-Causing Nonsense Mutations.

Authors:  Narayana Murthy Sabbavarapu; Michal Shavit; Yarden Degani; Boris Smolkin; Valery Belakhov; Timor Baasov
Journal:  ACS Med Chem Lett       Date:  2016-02-08       Impact factor: 4.345

7.  Predictive Analysis of the Side Chain Conformation of the Higher Carbon Sugars: Application to the Preorganization of the Aminoglycoside Ring 1 Side Chain for Binding to the Bacterial Ribosomal Decoding A Site.

Authors:  Michael G Pirrone; Marina Gysin; Klara Haldimann; Sven N Hobbie; Andrea Vasella; David Crich
Journal:  J Org Chem       Date:  2020-09-23       Impact factor: 4.354

8.  Exploring eukaryotic versus prokaryotic ribosomal RNA recognition with aminoglycoside derivatives.

Authors:  Narayana Murthy Sabbavarapu; Tomasz Pieńko; Bat-Hen Zalman; Joanna Trylska; Timor Baasov
Journal:  Medchemcomm       Date:  2018-02-02       Impact factor: 3.597

9.  Phase 1 Renal Impairment Trial Results Supports Targeted Individualized Dosing of ELX-02 in Patients With Nephropathic Cystinosis.

Authors:  Thomas Haverty; David J Wyatt; Kaela M Porter; Andi Leubitz; Kate Banks; Paul Goodyer; Ming-Yi Hu
Journal:  J Clin Pharmacol       Date:  2021-01-18       Impact factor: 3.126

10.  Synthesis and Antibacterial Activity of Propylamycin Derivatives Functionalized at the 5''- and Other Positions with a View to Overcoming Resistance Due to Aminoglycoside Modifying Enzymes.

Authors:  Dimitrijs Lubriks; Rimants Zogota; Vikram A Sarpe; Takahiko Matsushita; Girish C Sati; Klara Haldimann; Marina Gysin; Erik C Böttger; Andrea Vasella; Edgars Suna; Sven N Hobbie; David Crich
Journal:  ACS Infect Dis       Date:  2021-06-11       Impact factor: 5.578

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