Literature DB >> 23125694

(Dimethyl-phosphor-yl)methanaminium chloride.

Guido J Reiss1, Stefan Jörgens.   

Abstract

The crystal structure of the title salt, C(3)H(11)NOP(+)·Cl(-), is primarily built from centrosymmetric dimers of two cations, connected head-to-tail by two charge-supported strong N-H⋯O hydrogen bonds, with a graph-set descriptor R(2) (2)(10). The chloride counter-anions connect these dimeric cationic units into chains along the a-axis direction.

Entities:  

Year:  2012        PMID: 23125694      PMCID: PMC3470250          DOI: 10.1107/S1600536812037890

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds, see: Varbanov et al. (1987 ▶); Borisov et al. (1994 ▶); Kaukorat et al. (1997 ▶); Zagraniarsky et al. (2008 ▶); Kochel (2009 ▶). For a definition of the term tecton, see: Brunet et al. (1997 ▶); Resnati & Metrangolo (2007 ▶). For the use of anionic phosphinic acid derivatives as supra­molecular tectons, see: Glidewell et al. (2000 ▶); Chen et al. (2010 ▶). For graph-set theory and its applications, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Grell et al. (2002 ▶). For hydrogen-bonded phosphinic acid derivatives, see: Reiss & Engel (2008 ▶); Meyer et al. (2010 ▶). For typical NH+⋯Cl− hydrogen-bond parameters, see: Farrugia et al. (2001 ▶); Reiss & Bajorat (2008 ▶); Kovács & Varga (2006 ▶). For the DDM program used to obtain a profile fit of the powder diffraction data of a bulk sample of the title compound, see: Solovyov (2004 ▶).

Experimental

Crystal data

C3H11NOP+·Cl− M = 143.55 Triclinic, a = 5.2965 (2) Å b = 7.7030 (4) Å c = 8.8035 (3) Å α = 84.057 (4)° β = 87.691 (3)° γ = 89.016 (4)° V = 356.93 (3) Å3 Z = 2 Mo Kα radiation μ = 0.66 mm−1 T = 106 K 0.92 × 0.78 × 0.05 mm

Data collection

Oxford Diffraction Xcalibur diffractometer, EOS detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.613, T max = 1.000 3785 measured reflections 2076 independent reflections 1968 reflections with I > 2σ(I) R int = 0.012

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.049 S = 1.08 2076 reflections 93 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2011 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812037890/fj2594sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812037890/fj2594Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812037890/fj2594Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H11NOP+·ClZ = 2
Mr = 143.55F(000) = 152
Triclinic, P1Dx = 1.336 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.2965 (2) ÅCell parameters from 3569 reflections
b = 7.7030 (4) Åθ = 3.3–32.6°
c = 8.8035 (3) ŵ = 0.66 mm1
α = 84.057 (4)°T = 106 K
β = 87.691 (3)°Plate, colourless
γ = 89.016 (4)°0.92 × 0.78 × 0.05 mm
V = 356.93 (3) Å3
Oxford Diffraction Xcalibur diffractometer, Eos2076 independent reflections
Radiation source: fine-focus sealed tube1968 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.012
Detector resolution: 16.2711 pixels mm-1θmax = 30.0°, θmin = 3.4°
ω scansh = −4→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −10→10
Tmin = 0.613, Tmax = 1.000l = −12→12
3785 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.049w = 1/[σ2(Fo2) + (0.012P)2 + 0.2P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2076 reflectionsΔρmax = 0.48 e Å3
93 parametersΔρmin = −0.34 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (2)
Experimental. Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.35.21 Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.83052 (4)−0.22956 (3)0.16135 (3)0.01445 (7)
P10.48926 (5)0.25417 (3)0.28914 (3)0.00963 (7)
O10.65884 (14)0.18353 (10)0.41347 (8)0.01364 (15)
N10.31590 (16)−0.08170 (11)0.28582 (10)0.01068 (16)
H10.465 (3)−0.105 (2)0.2342 (17)0.024 (4)*
H20.192 (3)−0.142 (2)0.2566 (18)0.023 (4)*
H30.338 (3)−0.112 (2)0.3865 (19)0.025 (4)*
C10.23746 (18)0.10462 (13)0.26016 (12)0.01177 (18)
H1A0.099 (3)0.1224 (18)0.3275 (16)0.017 (3)*
H1B0.185 (3)0.128 (2)0.1563 (18)0.022 (4)*
C20.3235 (2)0.45000 (15)0.32696 (15)0.0207 (2)
H2A0.44250.54160.33220.036 (5)*
H2B0.22930.43060.42250.031 (4)*
H2C0.20980.48300.24650.029 (4)*
C30.6544 (2)0.29523 (15)0.10879 (12)0.0159 (2)
H3A0.74230.19100.08450.028 (4)*
H3B0.77370.38680.11350.030 (4)*
H3C0.53610.33000.03120.020 (4)*
U11U22U33U12U13U23
Cl10.00962 (11)0.01729 (12)0.01731 (13)−0.00050 (8)−0.00147 (8)−0.00548 (9)
P10.00893 (12)0.00947 (12)0.01030 (12)0.00069 (8)−0.00136 (8)0.00023 (8)
O10.0127 (3)0.0166 (4)0.0112 (3)0.0006 (3)−0.0029 (3)0.0011 (3)
N10.0099 (4)0.0110 (4)0.0113 (4)−0.0007 (3)−0.0019 (3)−0.0013 (3)
C10.0085 (4)0.0118 (4)0.0146 (5)0.0006 (3)−0.0016 (3)0.0008 (3)
C20.0192 (5)0.0141 (5)0.0296 (6)0.0047 (4)−0.0037 (4)−0.0056 (4)
C30.0131 (5)0.0222 (5)0.0117 (5)−0.0035 (4)−0.0010 (4)0.0025 (4)
P1—O11.4966 (7)C1—H1A0.941 (15)
P1—C31.7832 (11)C1—H1B0.965 (15)
P1—C21.7866 (11)C2—H2A0.9600
P1—C11.8199 (10)C2—H2B0.9600
N1—C11.4844 (13)C2—H2C0.9600
N1—H10.921 (16)C3—H3A0.9600
N1—H20.872 (16)C3—H3B0.9600
N1—H30.905 (16)C3—H3C0.9600
O1—P1—C3112.50 (5)N1—C1—H1B108.5 (9)
O1—P1—C2114.00 (5)P1—C1—H1B108.3 (9)
C3—P1—C2107.74 (6)H1A—C1—H1B109.1 (13)
O1—P1—C1112.45 (4)P1—C2—H2A109.5
C3—P1—C1105.97 (5)P1—C2—H2B109.5
C2—P1—C1103.48 (5)H2A—C2—H2B109.5
C1—N1—H1112.4 (9)P1—C2—H2C109.5
C1—N1—H2106.4 (10)H2A—C2—H2C109.5
H1—N1—H2111.5 (14)H2B—C2—H2C109.5
C1—N1—H3109.8 (10)P1—C3—H3A109.5
H1—N1—H3107.6 (13)P1—C3—H3B109.5
H2—N1—H3109.1 (14)H3A—C3—H3B109.5
N1—C1—P1113.12 (7)P1—C3—H3C109.5
N1—C1—H1A107.9 (9)H3A—C3—H3C109.5
P1—C1—H1A109.8 (9)H3B—C3—H3C109.5
O1—P1—C1—N1−34.32 (9)C2—P1—C1—N1−157.80 (8)
C3—P1—C1—N188.97 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1···Cl10.921 (16)2.245 (16)3.1367 (9)162.8 (13)
N1—H2···Cl1i0.872 (16)2.262 (16)3.1134 (9)165.3 (14)
N1—H3···O1ii0.905 (16)1.791 (16)2.6900 (12)172.4 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯Cl10.921 (16)2.245 (16)3.1367 (9)162.8 (13)
N1—H2⋯Cl1i 0.872 (16)2.262 (16)3.1134 (9)165.3 (14)
N1—H3⋯O1ii 0.905 (16)1.791 (16)2.6900 (12)172.4 (15)

Symmetry codes: (i) ; (ii) .

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2.  A short history of SHELX.

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3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

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4.  Ethane-1,2-diylbis(methyl-phosphinic acid).

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5.  Redetermination of trans-cyclo-hexane-1,4-diammonium dichloride.

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  5 in total
  6 in total

1.  (Di-methyl-phosphor-yl)methanaminium hydrogen oxalate-oxalic acid (2/1).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-15

2.  Bis[(di-methyl-phosphor-yl)methan-amin-ium] tetra-chlorido-palladate(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19

3.  (Di-methyl-phosphor-yl)methanaminium nitrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-16

4.  Pseudosymmetric fac-di-aqua-trichlorido[(di-methyl-phosphor-yl)methanaminium-κO]manganese(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

5.  trans-Dichlorido-tetra-kis-[(di-methyl-phosphor-yl)methanaminium-κO]cobalt(II) tetra-chloridocobaltate(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

6.  (Di-methyl-phosphor-yl)methanaminium iodide-(di-methyl-phosphor-yl)methan-amine (1/1).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13
  6 in total

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