Literature DB >> 24109340

(Di-methyl-phosphor-yl)methanaminium iodide-(di-methyl-phosphor-yl)methan-amine (1/1).

Guido J Reiss1.   

Abstract

The asymmetric unit of the title structure, C3H11NOP(+)·I(-)·C3H10NOP, consists of one (di-methyl-phosphor-yl)methanamine (dpma) mol-ecule, one (di-methyl-phosphor-yl)methanaminium (dpmaH) ion and one iodide counter-anion. In the crystal, medium-strong to weak N-H⋯O and N-H⋯N hydrogen bonds connect dpmaH cations and dpma mol-ecules into strands along [001]. The iodide counter-anions form only very weak hydrogen bonds. The crystal used for the diffraction study was found to be an inversion twin with a ratio of 0.83 (2):0.17 (2). The title structure is isotypic to that of dpmaH[ClO4dpma [Buhl et al. (2013 ▶). Crystals 3, 350-362].

Entities:  

Year:  2013        PMID: 24109340      PMCID: PMC3793753          DOI: 10.1107/S1600536813019004

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition metal complexes of the dpma ligand, see: Dodoff et al. (1990 ▶); Borisov et al. (1994 ▶); Trendafilova et al. (1997 ▶); Kochel (2009 ▶). For transition metal complexes of the cationic dpmaH ligand, see: Reiss (2013a ▶,b ▶). For dpmaH+ salts, see: Reiss & Jörgens (2012 ▶); Buhl et al. (2013 ▶); Lambertz et al. (2013 ▶). For the term tecton, see: Brunet et al. (1997 ▶). For the graph-set analysis method, see: Grell et al. (2002 ▶).

Experimental

Crystal data

C3H11NOP+·I−·C3H10NOP M = 342.09 Orthorhombic, a = 17.7791 (3) Å b = 11.1766 (2) Å c = 6.91805 (12) Å V = 1374.69 (4) Å3 Z = 4 Mo Kα radiation μ = 2.54 mm−1 T = 100 K 0.36 × 0.19 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Eos diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.538, T max = 0.808 10904 measured reflections 3062 independent reflections 2972 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.016 wR(F 2) = 0.033 S = 1.05 3062 reflections 145 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Refined as an inversion twin. Flack parameter: 0.173 (17) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2011) ▶; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813019004/zl2559sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019004/zl2559Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813019004/zl2559Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C3H11NOP+·I·C3H10NOPDx = 1.653 Mg m3
Mr = 342.09Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pca21Cell parameters from 8874 reflections
a = 17.7791 (3) Åθ = 2.9–29.4°
b = 11.1766 (2) ŵ = 2.54 mm1
c = 6.91805 (12) ÅT = 100 K
V = 1374.69 (4) Å3Block, colorless
Z = 40.36 × 0.19 × 0.10 mm
F(000) = 680
Oxford Diffraction Xcalibur Eos diffractometer3062 independent reflections
Radiation source: Enhance (Mo) X-ray Source2972 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 16.2711 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω scansh = −21→22
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009), based on expressions derived by Clark & Reid (1995)]k = −14→11
Tmin = 0.538, Tmax = 0.808l = −8→8
10904 measured reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.016w = 1/[σ2(Fo2) + (0.011P)2 + 0.370P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.033(Δ/σ)max = 0.003
S = 1.05Δρmax = 0.32 e Å3
3062 reflectionsΔρmin = −0.28 e Å3
145 parametersExtinction correction: SHELXL2013 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
6 restraintsExtinction coefficient: 0.00115 (12)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Refined as an inversion twin.
Secondary atom site location: difference Fourier mapFlack parameter: 0.173 (17)
Experimental. CrysAlisPro, Version 1.171.34.44, (Oxford Diffraction, 2009). Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by Clark & Reid (1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
I10.57385 (2)0.73704 (2)0.75007 (5)0.01322 (6)
P10.34627 (4)0.54054 (8)0.66655 (12)0.00984 (17)
O10.31186 (10)0.62671 (19)0.8072 (3)0.0116 (5)
N10.33299 (15)0.7173 (3)0.3886 (4)0.0110 (6)
H110.3537 (18)0.748 (3)0.288 (5)0.025 (11)*
H120.2881 (17)0.693 (4)0.364 (5)0.033 (12)*
H130.331 (2)0.775 (3)0.481 (6)0.041 (13)*
C10.28010 (15)0.4322 (3)0.5842 (4)0.0125 (7)
H1A0.26430.38330.69090.019*
H1B0.30310.38270.48740.019*
H1C0.23720.47210.52990.019*
C20.42584 (14)0.4612 (2)0.7564 (8)0.0164 (6)
H2A0.46470.51700.79040.025*
H2B0.44420.40770.65860.025*
H2C0.41150.41610.86870.025*
C30.38262 (16)0.6192 (3)0.4555 (5)0.0124 (7)
H3A0.43160.65210.48650.015*
H3B0.38920.56240.35090.015*
P20.35541 (4)0.99276 (7)0.78259 (13)0.01040 (17)
O20.32571 (12)0.9051 (2)0.6371 (3)0.0154 (5)
N20.38890 (15)0.8119 (3)1.0417 (4)0.0120 (6)
H210.370 (2)0.771 (3)0.957 (5)0.016 (10)*
H220.4349 (17)0.809 (4)1.022 (6)0.033 (12)*
C40.44922 (15)1.0407 (3)0.7318 (6)0.0170 (7)
H4A0.48190.97230.72710.026*
H4B0.46591.09420.83150.026*
H4C0.45031.08110.60940.026*
C50.30034 (16)1.1262 (3)0.7964 (5)0.0179 (8)
H5A0.30361.16870.67610.027*
H5B0.31901.17600.89890.027*
H5C0.24881.10580.82170.027*
C60.35496 (16)0.9310 (3)1.0246 (4)0.0119 (6)
H6A0.38170.98541.10950.014*
H6B0.30330.92671.06950.014*
U11U22U33U12U13U23
I10.01355 (9)0.01279 (10)0.01334 (9)0.00093 (6)0.00029 (13)0.00089 (17)
P10.0106 (4)0.0092 (4)0.0096 (4)0.0003 (3)0.0001 (3)0.0014 (3)
O10.0137 (10)0.0098 (12)0.0112 (11)−0.0002 (8)0.0022 (8)−0.0009 (8)
N10.0123 (14)0.0099 (16)0.0108 (13)−0.0017 (11)0.0011 (11)0.0004 (12)
C10.0153 (15)0.0105 (18)0.0116 (15)−0.0020 (12)−0.0005 (13)0.0001 (13)
C20.0149 (13)0.0170 (15)0.0172 (14)0.0023 (11)−0.0012 (17)0.000 (3)
C30.0117 (15)0.0118 (19)0.0137 (15)0.0010 (12)0.0023 (13)0.0011 (14)
P20.0105 (3)0.0099 (4)0.0108 (4)0.0014 (3)−0.0018 (3)−0.0004 (3)
O20.0182 (11)0.0133 (13)0.0146 (12)0.0035 (9)−0.0032 (9)−0.0035 (10)
N20.0126 (14)0.0109 (16)0.0125 (13)−0.0015 (11)−0.0009 (11)0.0000 (13)
C40.0162 (14)0.0208 (17)0.0141 (19)−0.0016 (11)0.0015 (16)0.0050 (19)
C50.0218 (15)0.0124 (17)0.020 (2)0.0065 (12)−0.0059 (13)−0.0033 (13)
C60.0113 (15)0.0113 (18)0.0130 (15)−0.0014 (12)0.0006 (12)0.0012 (13)
P1—O11.500 (2)P2—O21.501 (2)
P1—C21.782 (3)P2—C41.787 (3)
P1—C11.782 (3)P2—C51.787 (3)
P1—C31.823 (3)P2—C61.811 (3)
N1—C31.481 (4)N2—C61.467 (4)
N1—H110.86 (3)N2—H210.82 (3)
N1—H120.86 (3)N2—H220.83 (3)
N1—H130.91 (3)C4—H4A0.9600
C1—H1A0.9600C4—H4B0.9600
C1—H1B0.9600C4—H4C0.9600
C1—H1C0.9600C5—H5A0.9600
C2—H2A0.9600C5—H5B0.9600
C2—H2B0.9600C5—H5C0.9600
C2—H2C0.9600C6—H6A0.9700
C3—H3A0.9700C6—H6B0.9700
C3—H3B0.9700
O1—P1—C2114.65 (19)H3A—C3—H3B107.7
O1—P1—C1112.00 (13)O2—P2—C4113.09 (16)
C2—P1—C1107.30 (15)O2—P2—C5112.85 (13)
O1—P1—C3110.77 (14)C4—P2—C5105.77 (15)
C2—P1—C3103.78 (18)O2—P2—C6111.70 (14)
C1—P1—C3107.81 (15)C4—P2—C6107.47 (17)
C3—N1—H11107 (2)C5—P2—C6105.44 (15)
C3—N1—H12112 (3)C6—N2—H21106 (3)
H11—N1—H12111 (4)C6—N2—H22115 (3)
C3—N1—H13109 (3)H21—N2—H22106 (4)
H11—N1—H13108 (3)P2—C4—H4A109.5
H12—N1—H13109 (4)P2—C4—H4B109.5
P1—C1—H1A109.5H4A—C4—H4B109.5
P1—C1—H1B109.5P2—C4—H4C109.5
H1A—C1—H1B109.5H4A—C4—H4C109.5
P1—C1—H1C109.5H4B—C4—H4C109.5
H1A—C1—H1C109.5P2—C5—H5A109.5
H1B—C1—H1C109.5P2—C5—H5B109.5
P1—C2—H2A109.5H5A—C5—H5B109.5
P1—C2—H2B109.5P2—C5—H5C109.5
H2A—C2—H2B109.5H5A—C5—H5C109.5
P1—C2—H2C109.5H5B—C5—H5C109.5
H2A—C2—H2C109.5N2—C6—P2114.7 (2)
H2B—C2—H2C109.5N2—C6—H6A108.6
N1—C3—P1113.3 (2)P2—C6—H6A108.6
N1—C3—H3A108.9N2—C6—H6B108.6
P1—C3—H3A108.9P2—C6—H6B108.6
N1—C3—H3B108.9H6A—C6—H6B107.6
P1—C3—H3B108.9
O1—P1—C3—N1−40.2 (3)O2—P2—C6—N249.4 (3)
C2—P1—C3—N1−163.7 (2)C4—P2—C6—N2−75.2 (3)
C1—P1—C3—N182.7 (3)C5—P2—C6—N2172.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H11···N2i0.86 (3)1.95 (3)2.805 (4)173 (3)
N1—H12···O1ii0.86 (3)1.96 (3)2.824 (3)177 (4)
N1—H13···O20.91 (3)1.81 (3)2.716 (4)172 (4)
N2—H21···O10.82 (3)2.17 (3)2.965 (4)163 (4)
N2—H22···I10.83 (3)3.21 (3)3.948 (3)150 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H11⋯N2i 0.86 (3)1.95 (3)2.805 (4)173 (3)
N1—H12⋯O1ii 0.86 (3)1.96 (3)2.824 (3)177 (4)
N1—H13⋯O20.91 (3)1.81 (3)2.716 (4)172 (4)
N2—H21⋯O10.82 (3)2.17 (3)2.965 (4)163 (4)
N2—H22⋯I10.83 (3)3.21 (3)3.948 (3)150 (4)

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Dimethyl-phosphor-yl)methanaminium chloride.

Authors:  Guido J Reiss; Stefan Jörgens
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08

3.  Pseudosymmetric fac-di-aqua-trichlorido[(di-methyl-phosphor-yl)methanaminium-κO]manganese(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

4.  trans-Dichlorido-tetra-kis-[(di-methyl-phosphor-yl)methanaminium-κO]cobalt(II) tetra-chloridocobaltate(II).

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1.  (Di-methyl-phosphor-yl)methanaminium hydrogen oxalate-oxalic acid (2/1).

Authors:  Sebastian Bialek; Rebecca Clemens; Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-15

2.  Bis[(di-methyl-phosphor-yl)methan-amin-ium] tetra-chlorido-palladate(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19

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