| Literature DB >> 24109340 |
Abstract
The asymmetric unit of the title structure, C3H11NOP(+)·I(-)·C3H10NOP, consists of one (di-methyl-phosphor-yl)methanamine (dpma) mol-ecule, one (di-methyl-phosphor-yl)methanaminium (dpmaH) ion and one iodide counter-anion. In the crystal, medium-strong to weak N-H⋯O and N-H⋯N hydrogen bonds connect dpmaH cations and dpma mol-ecules into strands along [001]. The iodide counter-anions form only very weak hydrogen bonds. The crystal used for the diffraction study was found to be an inversion twin with a ratio of 0.83 (2):0.17 (2). The title structure is isotypic to that of dpmaH[ClO4]·dpma [Buhl et al. (2013 ▶). Crystals 3, 350-362].Entities:
Year: 2013 PMID: 24109340 PMCID: PMC3793753 DOI: 10.1107/S1600536813019004
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H11NOP+·I−·C3H10NOP | |
| Mo | |
| Orthorhombic, | Cell parameters from 8874 reflections |
| θ = 2.9–29.4° | |
| µ = 2.54 mm−1 | |
| Block, colorless | |
| 0.36 × 0.19 × 0.10 mm | |
| Oxford Diffraction Xcalibur Eos diffractometer | 3062 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2972 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.2711 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
| ω scans | |
| Absorption correction: analytical [ | |
| 10904 measured reflections |
| Refinement on | Hydrogen site location: difference Fourier map |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.003 | |
| Δρmax = 0.32 e Å−3 | |
| 3062 reflections | Δρmin = −0.28 e Å−3 |
| 145 parameters | Extinction correction: |
| 6 restraints | Extinction coefficient: 0.00115 (12) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Refined as an inversion twin. |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.173 (17) |
| Experimental. CrysAlisPro, Version 1.171.34.44, (Oxford Diffraction, 2009). Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by Clark & Reid (1995). |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refined as a 2-component inversion twin. |
| I1 | 0.57385 (2) | 0.73704 (2) | 0.75007 (5) | 0.01322 (6) | |
| P1 | 0.34627 (4) | 0.54054 (8) | 0.66655 (12) | 0.00984 (17) | |
| O1 | 0.31186 (10) | 0.62671 (19) | 0.8072 (3) | 0.0116 (5) | |
| N1 | 0.33299 (15) | 0.7173 (3) | 0.3886 (4) | 0.0110 (6) | |
| H11 | 0.3537 (18) | 0.748 (3) | 0.288 (5) | 0.025 (11)* | |
| H12 | 0.2881 (17) | 0.693 (4) | 0.364 (5) | 0.033 (12)* | |
| H13 | 0.331 (2) | 0.775 (3) | 0.481 (6) | 0.041 (13)* | |
| C1 | 0.28010 (15) | 0.4322 (3) | 0.5842 (4) | 0.0125 (7) | |
| H1A | 0.2643 | 0.3833 | 0.6909 | 0.019* | |
| H1B | 0.3031 | 0.3827 | 0.4874 | 0.019* | |
| H1C | 0.2372 | 0.4721 | 0.5299 | 0.019* | |
| C2 | 0.42584 (14) | 0.4612 (2) | 0.7564 (8) | 0.0164 (6) | |
| H2A | 0.4647 | 0.5170 | 0.7904 | 0.025* | |
| H2B | 0.4442 | 0.4077 | 0.6586 | 0.025* | |
| H2C | 0.4115 | 0.4161 | 0.8687 | 0.025* | |
| C3 | 0.38262 (16) | 0.6192 (3) | 0.4555 (5) | 0.0124 (7) | |
| H3A | 0.4316 | 0.6521 | 0.4865 | 0.015* | |
| H3B | 0.3892 | 0.5624 | 0.3509 | 0.015* | |
| P2 | 0.35541 (4) | 0.99276 (7) | 0.78259 (13) | 0.01040 (17) | |
| O2 | 0.32571 (12) | 0.9051 (2) | 0.6371 (3) | 0.0154 (5) | |
| N2 | 0.38890 (15) | 0.8119 (3) | 1.0417 (4) | 0.0120 (6) | |
| H21 | 0.370 (2) | 0.771 (3) | 0.957 (5) | 0.016 (10)* | |
| H22 | 0.4349 (17) | 0.809 (4) | 1.022 (6) | 0.033 (12)* | |
| C4 | 0.44922 (15) | 1.0407 (3) | 0.7318 (6) | 0.0170 (7) | |
| H4A | 0.4819 | 0.9723 | 0.7271 | 0.026* | |
| H4B | 0.4659 | 1.0942 | 0.8315 | 0.026* | |
| H4C | 0.4503 | 1.0811 | 0.6094 | 0.026* | |
| C5 | 0.30034 (16) | 1.1262 (3) | 0.7964 (5) | 0.0179 (8) | |
| H5A | 0.3036 | 1.1687 | 0.6761 | 0.027* | |
| H5B | 0.3190 | 1.1760 | 0.8989 | 0.027* | |
| H5C | 0.2488 | 1.1058 | 0.8217 | 0.027* | |
| C6 | 0.35496 (16) | 0.9310 (3) | 1.0246 (4) | 0.0119 (6) | |
| H6A | 0.3817 | 0.9854 | 1.1095 | 0.014* | |
| H6B | 0.3033 | 0.9267 | 1.0695 | 0.014* |
| I1 | 0.01355 (9) | 0.01279 (10) | 0.01334 (9) | 0.00093 (6) | 0.00029 (13) | 0.00089 (17) |
| P1 | 0.0106 (4) | 0.0092 (4) | 0.0096 (4) | 0.0003 (3) | 0.0001 (3) | 0.0014 (3) |
| O1 | 0.0137 (10) | 0.0098 (12) | 0.0112 (11) | −0.0002 (8) | 0.0022 (8) | −0.0009 (8) |
| N1 | 0.0123 (14) | 0.0099 (16) | 0.0108 (13) | −0.0017 (11) | 0.0011 (11) | 0.0004 (12) |
| C1 | 0.0153 (15) | 0.0105 (18) | 0.0116 (15) | −0.0020 (12) | −0.0005 (13) | 0.0001 (13) |
| C2 | 0.0149 (13) | 0.0170 (15) | 0.0172 (14) | 0.0023 (11) | −0.0012 (17) | 0.000 (3) |
| C3 | 0.0117 (15) | 0.0118 (19) | 0.0137 (15) | 0.0010 (12) | 0.0023 (13) | 0.0011 (14) |
| P2 | 0.0105 (3) | 0.0099 (4) | 0.0108 (4) | 0.0014 (3) | −0.0018 (3) | −0.0004 (3) |
| O2 | 0.0182 (11) | 0.0133 (13) | 0.0146 (12) | 0.0035 (9) | −0.0032 (9) | −0.0035 (10) |
| N2 | 0.0126 (14) | 0.0109 (16) | 0.0125 (13) | −0.0015 (11) | −0.0009 (11) | 0.0000 (13) |
| C4 | 0.0162 (14) | 0.0208 (17) | 0.0141 (19) | −0.0016 (11) | 0.0015 (16) | 0.0050 (19) |
| C5 | 0.0218 (15) | 0.0124 (17) | 0.020 (2) | 0.0065 (12) | −0.0059 (13) | −0.0033 (13) |
| C6 | 0.0113 (15) | 0.0113 (18) | 0.0130 (15) | −0.0014 (12) | 0.0006 (12) | 0.0012 (13) |
| P1—O1 | 1.500 (2) | P2—O2 | 1.501 (2) |
| P1—C2 | 1.782 (3) | P2—C4 | 1.787 (3) |
| P1—C1 | 1.782 (3) | P2—C5 | 1.787 (3) |
| P1—C3 | 1.823 (3) | P2—C6 | 1.811 (3) |
| N1—C3 | 1.481 (4) | N2—C6 | 1.467 (4) |
| N1—H11 | 0.86 (3) | N2—H21 | 0.82 (3) |
| N1—H12 | 0.86 (3) | N2—H22 | 0.83 (3) |
| N1—H13 | 0.91 (3) | C4—H4A | 0.9600 |
| C1—H1A | 0.9600 | C4—H4B | 0.9600 |
| C1—H1B | 0.9600 | C4—H4C | 0.9600 |
| C1—H1C | 0.9600 | C5—H5A | 0.9600 |
| C2—H2A | 0.9600 | C5—H5B | 0.9600 |
| C2—H2B | 0.9600 | C5—H5C | 0.9600 |
| C2—H2C | 0.9600 | C6—H6A | 0.9700 |
| C3—H3A | 0.9700 | C6—H6B | 0.9700 |
| C3—H3B | 0.9700 | ||
| O1—P1—C2 | 114.65 (19) | H3A—C3—H3B | 107.7 |
| O1—P1—C1 | 112.00 (13) | O2—P2—C4 | 113.09 (16) |
| C2—P1—C1 | 107.30 (15) | O2—P2—C5 | 112.85 (13) |
| O1—P1—C3 | 110.77 (14) | C4—P2—C5 | 105.77 (15) |
| C2—P1—C3 | 103.78 (18) | O2—P2—C6 | 111.70 (14) |
| C1—P1—C3 | 107.81 (15) | C4—P2—C6 | 107.47 (17) |
| C3—N1—H11 | 107 (2) | C5—P2—C6 | 105.44 (15) |
| C3—N1—H12 | 112 (3) | C6—N2—H21 | 106 (3) |
| H11—N1—H12 | 111 (4) | C6—N2—H22 | 115 (3) |
| C3—N1—H13 | 109 (3) | H21—N2—H22 | 106 (4) |
| H11—N1—H13 | 108 (3) | P2—C4—H4A | 109.5 |
| H12—N1—H13 | 109 (4) | P2—C4—H4B | 109.5 |
| P1—C1—H1A | 109.5 | H4A—C4—H4B | 109.5 |
| P1—C1—H1B | 109.5 | P2—C4—H4C | 109.5 |
| H1A—C1—H1B | 109.5 | H4A—C4—H4C | 109.5 |
| P1—C1—H1C | 109.5 | H4B—C4—H4C | 109.5 |
| H1A—C1—H1C | 109.5 | P2—C5—H5A | 109.5 |
| H1B—C1—H1C | 109.5 | P2—C5—H5B | 109.5 |
| P1—C2—H2A | 109.5 | H5A—C5—H5B | 109.5 |
| P1—C2—H2B | 109.5 | P2—C5—H5C | 109.5 |
| H2A—C2—H2B | 109.5 | H5A—C5—H5C | 109.5 |
| P1—C2—H2C | 109.5 | H5B—C5—H5C | 109.5 |
| H2A—C2—H2C | 109.5 | N2—C6—P2 | 114.7 (2) |
| H2B—C2—H2C | 109.5 | N2—C6—H6A | 108.6 |
| N1—C3—P1 | 113.3 (2) | P2—C6—H6A | 108.6 |
| N1—C3—H3A | 108.9 | N2—C6—H6B | 108.6 |
| P1—C3—H3A | 108.9 | P2—C6—H6B | 108.6 |
| N1—C3—H3B | 108.9 | H6A—C6—H6B | 107.6 |
| P1—C3—H3B | 108.9 | ||
| O1—P1—C3—N1 | −40.2 (3) | O2—P2—C6—N2 | 49.4 (3) |
| C2—P1—C3—N1 | −163.7 (2) | C4—P2—C6—N2 | −75.2 (3) |
| C1—P1—C3—N1 | 82.7 (3) | C5—P2—C6—N2 | 172.3 (2) |
| H··· | ||||
| N1—H11···N2i | 0.86 (3) | 1.95 (3) | 2.805 (4) | 173 (3) |
| N1—H12···O1ii | 0.86 (3) | 1.96 (3) | 2.824 (3) | 177 (4) |
| N1—H13···O2 | 0.91 (3) | 1.81 (3) | 2.716 (4) | 172 (4) |
| N2—H21···O1 | 0.82 (3) | 2.17 (3) | 2.965 (4) | 163 (4) |
| N2—H22···I1 | 0.83 (3) | 3.21 (3) | 3.948 (3) | 150 (4) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H11⋯N2i | 0.86 (3) | 1.95 (3) | 2.805 (4) | 173 (3) |
| N1—H12⋯O1ii | 0.86 (3) | 1.96 (3) | 2.824 (3) | 177 (4) |
| N1—H13⋯O2 | 0.91 (3) | 1.81 (3) | 2.716 (4) | 172 (4) |
| N2—H21⋯O1 | 0.82 (3) | 2.17 (3) | 2.965 (4) | 163 (4) |
| N2—H22⋯I1 | 0.83 (3) | 3.21 (3) | 3.948 (3) | 150 (4) |
Symmetry codes: (i) ; (ii) .