Literature DB >> 24765013

(Di-methyl-phosphor-yl)methanaminium hydrogen oxalate-oxalic acid (2/1).

Sebastian Bialek1, Rebecca Clemens1, Guido J Reiss1.   

Abstract

The reaction of (di-methyl-phosphor-yl)methanamine (dpma) with oxalic acid in ethanol yielded the title solvated salt, C3H11NOP(+)·C2HO4 (-)·0.5C2H2O4. Its asymmetric unit consists of one dpmaH(+) cation, one hydrogen oxalate anion and a half-mol-ecule of oxalic acid located around a twofold rotation axis. The H atom of the hydrogen oxalate anion is statistically disordered over two positions that are trans to each other. The hydrogen oxalate monoanion is not planar (bend angle ∼16°) whereas the oxalic acid molecule shows a significantly smaller bend angle (∼7°). In the crystal, the components are connected by strong O-H⋯O and much weaker N-H⋯O hydrogen bonds, leading to the formation of layers extending parallel to (001). The structure was refined from a racemically twinned crystal with twin components in an approximate 1:1 ratio.

Entities:  

Year:  2014        PMID: 24765013      PMCID: PMC3998424          DOI: 10.1107/S1600536814002931

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For transition metal complexes of the cationic dpmaH+ ligand, see: Reiss (2013a ▶,c ▶). For simple dpmaH+ salts, see: Reiss & Jörgens (2012 ▶); Bianga et al. (2013 ▶); Buhl et al. (2013 ▶); Lambertz et al. (2013 ▶); Reiss (2013b ▶,d ▶).

Experimental

Crystal data

C3H11NOPC2HO4 −·0.5C2H2O4 M = 242.14 Orthorhombic, a = 11.1482 (6) Å b = 13.0903 (7) Å c = 7.0432 (4) Å V = 1027.84 (10) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.52 × 0.24 × 0.14 mm

Data collection

Bruker APEXII CCD diffractometer 92924 measured reflections 3002 independent reflections 2990 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.019 wR(F 2) = 0.052 S = 1.05 3002 reflections 192 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: refined as an inversion twin Absolute structure parameter: 0.54 (7) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814002931/wm5001sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814002931/wm5001Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814002931/wm5001Isup3.cml CCDC reference: Additional supporting information: crystallographic information; 3D view; checkCIF report
C3H11NOP+·C2HO4·0.5C2H2O4Dx = 1.565 Mg m3
Mr = 242.14Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P21212Cell parameters from 9422 reflections
a = 11.1482 (6) Åθ = 2.9–35.9°
b = 13.0903 (7) ŵ = 0.29 mm1
c = 7.0432 (4) ÅT = 296 K
V = 1027.84 (10) Å3Lath, colourless
Z = 40.52 × 0.24 × 0.14 mm
F(000) = 508
Bruker APEXII CCD diffractometer2990 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.020
Graphite monochromatorθmax = 30.0°, θmin = 2.4°
φ and ω scansh = −15→15
92924 measured reflectionsk = −18→18
3002 independent reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.019H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.052w = 1/[σ2(Fo2) + (0.030P)2 + 0.150P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
3002 reflectionsΔρmax = 0.24 e Å3
192 parametersΔρmin = −0.16 e Å3
0 restraintsAbsolute structure: refined as an inversion twin
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.54 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/UeqOcc. (<1)
P10.59355 (2)0.16995 (2)0.76357 (4)0.02120 (7)
O10.66126 (9)0.07493 (7)0.71183 (16)0.0320 (2)
C10.45282 (14)0.14728 (13)0.8751 (3)0.0401 (3)
H1A0.402 (3)0.101 (2)0.800 (4)0.077 (8)*
H1B0.415 (2)0.216 (2)0.902 (4)0.066 (7)*
H1C0.467 (3)0.120 (2)0.997 (4)0.069 (8)*
C20.67941 (16)0.25082 (12)0.9144 (2)0.0362 (3)
H2A0.696 (3)0.208 (2)1.021 (4)0.066 (8)*
H2B0.637 (2)0.3147 (18)0.947 (3)0.048 (6)*
H2C0.754 (2)0.268 (2)0.851 (4)0.069 (8)*
C30.55056 (10)0.24000 (9)0.55333 (18)0.0226 (2)
H3A0.5027 (19)0.1946 (16)0.482 (3)0.039 (5)*
H3B0.5075 (19)0.3008 (15)0.593 (3)0.038 (5)*
N10.65260 (10)0.27530 (8)0.43508 (17)0.0253 (2)
H1N0.6245 (19)0.3065 (17)0.341 (3)0.043 (5)*
H2N0.694 (2)0.2243 (17)0.397 (3)0.040 (5)*
H3N0.6989 (19)0.3213 (16)0.497 (3)0.037 (5)*
O20.60038 (7)0.04219 (7)0.26969 (15)0.02816 (18)
O30.67262 (8)−0.10318 (7)0.38932 (17)0.0314 (2)
O40.89578 (8)−0.03192 (7)0.33626 (19)0.0354 (2)
O50.82187 (8)0.12549 (7)0.30304 (17)0.0312 (2)
H20.539 (3)0.014 (3)0.272 (5)0.035 (7)*0.5
H40.962 (3)−0.007 (3)0.328 (5)0.035 (7)*0.5
C40.68433 (9)−0.01553 (8)0.33008 (17)0.0212 (2)
C50.81095 (9)0.03311 (9)0.32141 (17)0.0212 (2)
H60.283 (2)0.476 (2)0.220 (4)0.070 (8)*
O60.34552 (9)0.51669 (8)0.19359 (19)0.0380 (3)
O70.45436 (10)0.37300 (8)0.2131 (2)0.0404 (3)
C60.44455 (11)0.46465 (10)0.20114 (19)0.0271 (2)
U11U22U33U12U13U23
P10.01823 (12)0.01867 (12)0.02670 (13)0.00132 (9)0.00031 (11)−0.00042 (10)
O10.0279 (4)0.0260 (4)0.0421 (5)0.0105 (3)−0.0041 (4)−0.0037 (4)
C10.0283 (6)0.0398 (8)0.0521 (9)0.0016 (6)0.0134 (7)0.0109 (7)
C20.0451 (8)0.0336 (7)0.0299 (6)−0.0056 (6)−0.0105 (6)−0.0022 (5)
C30.0179 (5)0.0198 (5)0.0300 (5)0.0019 (4)−0.0031 (4)−0.0012 (4)
N10.0271 (5)0.0211 (4)0.0275 (5)0.0033 (4)0.0014 (4)0.0007 (4)
O20.0134 (3)0.0272 (4)0.0439 (5)−0.0003 (3)−0.0022 (4)0.0045 (4)
O30.0184 (4)0.0201 (4)0.0557 (6)−0.0023 (3)0.0030 (4)0.0049 (4)
O40.0126 (3)0.0220 (4)0.0715 (7)0.0001 (3)−0.0009 (4)0.0047 (4)
O50.0194 (4)0.0187 (4)0.0556 (6)−0.0024 (3)0.0005 (4)0.0019 (4)
C40.0131 (4)0.0197 (5)0.0307 (5)−0.0016 (4)0.0017 (4)−0.0027 (4)
C50.0129 (4)0.0203 (4)0.0305 (5)−0.0011 (4)0.0010 (4)0.0004 (4)
O60.0199 (4)0.0279 (5)0.0661 (8)−0.0022 (3)0.0020 (4)0.0074 (5)
O70.0291 (5)0.0237 (4)0.0685 (8)−0.0027 (4)−0.0058 (5)0.0032 (5)
C60.0224 (5)0.0237 (5)0.0351 (6)−0.0033 (4)−0.0017 (4)0.0014 (4)
P1—O11.5000 (9)N1—H2N0.86 (2)
P1—C21.7791 (15)N1—H3N0.91 (2)
P1—C11.7796 (15)O2—C41.2759 (14)
P1—C31.8064 (12)O2—H20.77 (3)
C1—H1A0.99 (3)O3—C41.2278 (15)
C1—H1B1.01 (3)O4—C51.2767 (14)
C1—H1C0.95 (3)O4—H40.81 (4)
C2—H2A0.96 (3)O5—C51.2223 (14)
C2—H2B0.99 (2)C4—C51.5497 (15)
C2—H2C0.97 (3)O6—C61.2984 (15)
C3—N11.4836 (16)O6—H60.89 (3)
C3—H3A0.94 (2)O7—C61.2076 (15)
C3—H3B0.97 (2)C6—C6i1.544 (2)
N1—H1N0.84 (2)
O1—P1—C2111.58 (7)N1—C3—H3B106.5 (12)
O1—P1—C1114.37 (7)P1—C3—H3B108.3 (12)
C2—P1—C1108.05 (9)H3A—C3—H3B112.9 (17)
O1—P1—C3110.81 (6)C3—N1—H1N107.9 (15)
C2—P1—C3109.28 (7)C3—N1—H2N110.4 (15)
C1—P1—C3102.28 (7)H1N—N1—H2N109 (2)
P1—C1—H1A112.1 (17)C3—N1—H3N112.0 (13)
P1—C1—H1B107.9 (15)H1N—N1—H3N105.7 (19)
H1A—C1—H1B114 (2)H2N—N1—H3N111.2 (19)
P1—C1—H1C108.4 (18)C4—O2—H2111 (3)
H1A—C1—H1C110 (2)C5—O4—H4113 (3)
H1B—C1—H1C104 (2)O3—C4—O2126.07 (10)
P1—C2—H2A103.0 (16)O3—C4—C5119.62 (10)
P1—C2—H2B112.4 (13)O2—C4—C5114.31 (10)
H2A—C2—H2B114 (2)O5—C5—O4126.48 (10)
P1—C2—H2C109.1 (17)O5—C5—C4120.09 (10)
H2A—C2—H2C110 (2)O4—C5—C4113.42 (9)
H2B—C2—H2C109 (2)C6—O6—H6110.0 (18)
N1—C3—P1114.51 (8)O7—C6—O6126.95 (12)
N1—C3—H3A109.3 (12)O7—C6—C6i121.53 (15)
P1—C3—H3A105.6 (12)O6—C6—C6i111.48 (13)
O1—P1—C3—N1−61.08 (10)O2—C4—C5—O516.86 (17)
C2—P1—C3—N162.27 (11)O3—C4—C5—O415.53 (18)
C1—P1—C3—N1176.61 (10)O2—C4—C5—O4−163.53 (12)
O3—C4—C5—O5−164.08 (13)
D—H···AD—HH···AD···AD—H···A
O2—H2···O2ii0.77 (3)1.73 (4)2.4959 (17)177 (4)
O4—H4···O4iii0.81 (4)1.67 (4)2.4694 (18)171 (4)
N1—H1N···O6i0.84 (2)2.56 (2)3.2106 (16)135.4 (19)
N1—H1N···O70.84 (2)2.27 (2)2.9939 (17)144 (2)
N1—H2N···O50.86 (2)2.03 (2)2.8760 (14)168 (2)
N1—H3N···O3iv0.91 (2)1.92 (2)2.8030 (15)166.2 (19)
N1—H3N···O4iv0.91 (2)2.49 (2)3.0419 (16)120.0 (16)
O6—H6···O1v0.89 (3)1.59 (3)2.4701 (14)168 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O2i 0.77 (3)1.73 (4)2.4959 (17)177 (4)
O4—H4⋯O4ii 0.81 (4)1.67 (4)2.4694 (18)171 (4)
N1—H1N⋯O6iii 0.84 (2)2.56 (2)3.2106 (16)135.4 (19)
N1—H1N⋯O70.84 (2)2.27 (2)2.9939 (17)144 (2)
N1—H2N⋯O50.86 (2)2.03 (2)2.8760 (14)168 (2)
N1—H3N⋯O3iv 0.91 (2)1.92 (2)2.8030 (15)166.2 (19)
N1—H3N⋯O4iv 0.91 (2)2.49 (2)3.0419 (16)120.0 (16)
O6—H6⋯O1v 0.89 (3)1.59 (3)2.4701 (14)168 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (Di-methyl-phosphor-yl)methanaminium nitrate.

Authors:  Claudia M Bianga; Julia Eggeling; Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-16

3.  (Dimethyl-phosphor-yl)methanaminium chloride.

Authors:  Guido J Reiss; Stefan Jörgens
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08

4.  Pseudosymmetric fac-di-aqua-trichlorido[(di-methyl-phosphor-yl)methanaminium-κO]manganese(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

5.  trans-Dichlorido-tetra-kis-[(di-methyl-phosphor-yl)methanaminium-κO]cobalt(II) tetra-chloridocobaltate(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-10

6.  (Di-methyl-phosphor-yl)methanaminium iodide-(di-methyl-phosphor-yl)methan-amine (1/1).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13
  6 in total

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