| Literature DB >> 24765013 |
Sebastian Bialek1, Rebecca Clemens1, Guido J Reiss1.
Abstract
The reaction of (di-methyl-phosphor-yl)methanamine (dpma) with oxalic acid in ethanol yielded the title solvated salt, C3H11NOP(+)·C2HO4 (-)·0.5C2H2O4. Its asymmetric unit consists of one dpmaH(+) cation, one hydrogen oxalate anion and a half-mol-ecule of oxalic acid located around a twofold rotation axis. The H atom of the hydrogen oxalate anion is statistically disordered over two positions that are trans to each other. The hydrogen oxalate monoanion is not planar (bend angle ∼16°) whereas the oxalic acid molecule shows a significantly smaller bend angle (∼7°). In the crystal, the components are connected by strong O-H⋯O and much weaker N-H⋯O hydrogen bonds, leading to the formation of layers extending parallel to (001). The structure was refined from a racemically twinned crystal with twin components in an approximate 1:1 ratio.Entities:
Year: 2014 PMID: 24765013 PMCID: PMC3998424 DOI: 10.1107/S1600536814002931
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C3H11NOP+·C2HO4−·0.5C2H2O4 | |
| Mo | |
| Orthorhombic, | Cell parameters from 9422 reflections |
| θ = 2.9–35.9° | |
| µ = 0.29 mm−1 | |
| Lath, colourless | |
| 0.52 × 0.24 × 0.14 mm | |
| Bruker APEXII CCD diffractometer | 2990 reflections with |
| Radiation source: sealed tube | |
| Graphite monochromator | θmax = 30.0°, θmin = 2.4° |
| φ and ω scans | |
| 92924 measured reflections | |
| 3002 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3002 reflections | Δρmax = 0.24 e Å−3 |
| 192 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Absolute structure: refined as an inversion twin |
| Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.54 (7) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refined as a 2-component inversion twin. |
| Occ. (<1) | |||||
| P1 | 0.59355 (2) | 0.16995 (2) | 0.76357 (4) | 0.02120 (7) | |
| O1 | 0.66126 (9) | 0.07493 (7) | 0.71183 (16) | 0.0320 (2) | |
| C1 | 0.45282 (14) | 0.14728 (13) | 0.8751 (3) | 0.0401 (3) | |
| H1A | 0.402 (3) | 0.101 (2) | 0.800 (4) | 0.077 (8)* | |
| H1B | 0.415 (2) | 0.216 (2) | 0.902 (4) | 0.066 (7)* | |
| H1C | 0.467 (3) | 0.120 (2) | 0.997 (4) | 0.069 (8)* | |
| C2 | 0.67941 (16) | 0.25082 (12) | 0.9144 (2) | 0.0362 (3) | |
| H2A | 0.696 (3) | 0.208 (2) | 1.021 (4) | 0.066 (8)* | |
| H2B | 0.637 (2) | 0.3147 (18) | 0.947 (3) | 0.048 (6)* | |
| H2C | 0.754 (2) | 0.268 (2) | 0.851 (4) | 0.069 (8)* | |
| C3 | 0.55056 (10) | 0.24000 (9) | 0.55333 (18) | 0.0226 (2) | |
| H3A | 0.5027 (19) | 0.1946 (16) | 0.482 (3) | 0.039 (5)* | |
| H3B | 0.5075 (19) | 0.3008 (15) | 0.593 (3) | 0.038 (5)* | |
| N1 | 0.65260 (10) | 0.27530 (8) | 0.43508 (17) | 0.0253 (2) | |
| H1N | 0.6245 (19) | 0.3065 (17) | 0.341 (3) | 0.043 (5)* | |
| H2N | 0.694 (2) | 0.2243 (17) | 0.397 (3) | 0.040 (5)* | |
| H3N | 0.6989 (19) | 0.3213 (16) | 0.497 (3) | 0.037 (5)* | |
| O2 | 0.60038 (7) | 0.04219 (7) | 0.26969 (15) | 0.02816 (18) | |
| O3 | 0.67262 (8) | −0.10318 (7) | 0.38932 (17) | 0.0314 (2) | |
| O4 | 0.89578 (8) | −0.03192 (7) | 0.33626 (19) | 0.0354 (2) | |
| O5 | 0.82187 (8) | 0.12549 (7) | 0.30304 (17) | 0.0312 (2) | |
| H2 | 0.539 (3) | 0.014 (3) | 0.272 (5) | 0.035 (7)* | 0.5 |
| H4 | 0.962 (3) | −0.007 (3) | 0.328 (5) | 0.035 (7)* | 0.5 |
| C4 | 0.68433 (9) | −0.01553 (8) | 0.33008 (17) | 0.0212 (2) | |
| C5 | 0.81095 (9) | 0.03311 (9) | 0.32141 (17) | 0.0212 (2) | |
| H6 | 0.283 (2) | 0.476 (2) | 0.220 (4) | 0.070 (8)* | |
| O6 | 0.34552 (9) | 0.51669 (8) | 0.19359 (19) | 0.0380 (3) | |
| O7 | 0.45436 (10) | 0.37300 (8) | 0.2131 (2) | 0.0404 (3) | |
| C6 | 0.44455 (11) | 0.46465 (10) | 0.20114 (19) | 0.0271 (2) |
| P1 | 0.01823 (12) | 0.01867 (12) | 0.02670 (13) | 0.00132 (9) | 0.00031 (11) | −0.00042 (10) |
| O1 | 0.0279 (4) | 0.0260 (4) | 0.0421 (5) | 0.0105 (3) | −0.0041 (4) | −0.0037 (4) |
| C1 | 0.0283 (6) | 0.0398 (8) | 0.0521 (9) | 0.0016 (6) | 0.0134 (7) | 0.0109 (7) |
| C2 | 0.0451 (8) | 0.0336 (7) | 0.0299 (6) | −0.0056 (6) | −0.0105 (6) | −0.0022 (5) |
| C3 | 0.0179 (5) | 0.0198 (5) | 0.0300 (5) | 0.0019 (4) | −0.0031 (4) | −0.0012 (4) |
| N1 | 0.0271 (5) | 0.0211 (4) | 0.0275 (5) | 0.0033 (4) | 0.0014 (4) | 0.0007 (4) |
| O2 | 0.0134 (3) | 0.0272 (4) | 0.0439 (5) | −0.0003 (3) | −0.0022 (4) | 0.0045 (4) |
| O3 | 0.0184 (4) | 0.0201 (4) | 0.0557 (6) | −0.0023 (3) | 0.0030 (4) | 0.0049 (4) |
| O4 | 0.0126 (3) | 0.0220 (4) | 0.0715 (7) | 0.0001 (3) | −0.0009 (4) | 0.0047 (4) |
| O5 | 0.0194 (4) | 0.0187 (4) | 0.0556 (6) | −0.0024 (3) | 0.0005 (4) | 0.0019 (4) |
| C4 | 0.0131 (4) | 0.0197 (5) | 0.0307 (5) | −0.0016 (4) | 0.0017 (4) | −0.0027 (4) |
| C5 | 0.0129 (4) | 0.0203 (4) | 0.0305 (5) | −0.0011 (4) | 0.0010 (4) | 0.0004 (4) |
| O6 | 0.0199 (4) | 0.0279 (5) | 0.0661 (8) | −0.0022 (3) | 0.0020 (4) | 0.0074 (5) |
| O7 | 0.0291 (5) | 0.0237 (4) | 0.0685 (8) | −0.0027 (4) | −0.0058 (5) | 0.0032 (5) |
| C6 | 0.0224 (5) | 0.0237 (5) | 0.0351 (6) | −0.0033 (4) | −0.0017 (4) | 0.0014 (4) |
| P1—O1 | 1.5000 (9) | N1—H2N | 0.86 (2) |
| P1—C2 | 1.7791 (15) | N1—H3N | 0.91 (2) |
| P1—C1 | 1.7796 (15) | O2—C4 | 1.2759 (14) |
| P1—C3 | 1.8064 (12) | O2—H2 | 0.77 (3) |
| C1—H1A | 0.99 (3) | O3—C4 | 1.2278 (15) |
| C1—H1B | 1.01 (3) | O4—C5 | 1.2767 (14) |
| C1—H1C | 0.95 (3) | O4—H4 | 0.81 (4) |
| C2—H2A | 0.96 (3) | O5—C5 | 1.2223 (14) |
| C2—H2B | 0.99 (2) | C4—C5 | 1.5497 (15) |
| C2—H2C | 0.97 (3) | O6—C6 | 1.2984 (15) |
| C3—N1 | 1.4836 (16) | O6—H6 | 0.89 (3) |
| C3—H3A | 0.94 (2) | O7—C6 | 1.2076 (15) |
| C3—H3B | 0.97 (2) | C6—C6i | 1.544 (2) |
| N1—H1N | 0.84 (2) | ||
| O1—P1—C2 | 111.58 (7) | N1—C3—H3B | 106.5 (12) |
| O1—P1—C1 | 114.37 (7) | P1—C3—H3B | 108.3 (12) |
| C2—P1—C1 | 108.05 (9) | H3A—C3—H3B | 112.9 (17) |
| O1—P1—C3 | 110.81 (6) | C3—N1—H1N | 107.9 (15) |
| C2—P1—C3 | 109.28 (7) | C3—N1—H2N | 110.4 (15) |
| C1—P1—C3 | 102.28 (7) | H1N—N1—H2N | 109 (2) |
| P1—C1—H1A | 112.1 (17) | C3—N1—H3N | 112.0 (13) |
| P1—C1—H1B | 107.9 (15) | H1N—N1—H3N | 105.7 (19) |
| H1A—C1—H1B | 114 (2) | H2N—N1—H3N | 111.2 (19) |
| P1—C1—H1C | 108.4 (18) | C4—O2—H2 | 111 (3) |
| H1A—C1—H1C | 110 (2) | C5—O4—H4 | 113 (3) |
| H1B—C1—H1C | 104 (2) | O3—C4—O2 | 126.07 (10) |
| P1—C2—H2A | 103.0 (16) | O3—C4—C5 | 119.62 (10) |
| P1—C2—H2B | 112.4 (13) | O2—C4—C5 | 114.31 (10) |
| H2A—C2—H2B | 114 (2) | O5—C5—O4 | 126.48 (10) |
| P1—C2—H2C | 109.1 (17) | O5—C5—C4 | 120.09 (10) |
| H2A—C2—H2C | 110 (2) | O4—C5—C4 | 113.42 (9) |
| H2B—C2—H2C | 109 (2) | C6—O6—H6 | 110.0 (18) |
| N1—C3—P1 | 114.51 (8) | O7—C6—O6 | 126.95 (12) |
| N1—C3—H3A | 109.3 (12) | O7—C6—C6i | 121.53 (15) |
| P1—C3—H3A | 105.6 (12) | O6—C6—C6i | 111.48 (13) |
| O1—P1—C3—N1 | −61.08 (10) | O2—C4—C5—O5 | 16.86 (17) |
| C2—P1—C3—N1 | 62.27 (11) | O3—C4—C5—O4 | 15.53 (18) |
| C1—P1—C3—N1 | 176.61 (10) | O2—C4—C5—O4 | −163.53 (12) |
| O3—C4—C5—O5 | −164.08 (13) |
| H··· | ||||
| O2—H2···O2ii | 0.77 (3) | 1.73 (4) | 2.4959 (17) | 177 (4) |
| O4—H4···O4iii | 0.81 (4) | 1.67 (4) | 2.4694 (18) | 171 (4) |
| N1—H1 | 0.84 (2) | 2.56 (2) | 3.2106 (16) | 135.4 (19) |
| N1—H1 | 0.84 (2) | 2.27 (2) | 2.9939 (17) | 144 (2) |
| N1—H2 | 0.86 (2) | 2.03 (2) | 2.8760 (14) | 168 (2) |
| N1—H3 | 0.91 (2) | 1.92 (2) | 2.8030 (15) | 166.2 (19) |
| N1—H3 | 0.91 (2) | 2.49 (2) | 3.0419 (16) | 120.0 (16) |
| O6—H6···O1v | 0.89 (3) | 1.59 (3) | 2.4701 (14) | 168 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O2i | 0.77 (3) | 1.73 (4) | 2.4959 (17) | 177 (4) |
| O4—H4⋯O4ii | 0.81 (4) | 1.67 (4) | 2.4694 (18) | 171 (4) |
| N1—H1 | 0.84 (2) | 2.56 (2) | 3.2106 (16) | 135.4 (19) |
| N1—H1 | 0.84 (2) | 2.27 (2) | 2.9939 (17) | 144 (2) |
| N1—H2 | 0.86 (2) | 2.03 (2) | 2.8760 (14) | 168 (2) |
| N1—H3 | 0.91 (2) | 1.92 (2) | 2.8030 (15) | 166.2 (19) |
| N1—H3 | 0.91 (2) | 2.49 (2) | 3.0419 (16) | 120.0 (16) |
| O6—H6⋯O1v | 0.89 (3) | 1.59 (3) | 2.4701 (14) | 168 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .