Literature DB >> 21200790

Redetermination of trans-cyclo-hexane-1,4-diammonium dichloride.

Guido J Reiss1, Sara Bajorat.   

Abstract

A redetermination of the crystal structure of the title compound, C(6)H(16)N(2) (2+)·2Cl(-), was undertaken. All atomic coordinates including those of the H atoms were refined freely. The cation is located on a centre of symmetry. Important for the crystal structure are wavy hydrogen-bonded layers that are formed by ammonium groups and chloride anions, giving hydrogen-bonded rings.

Entities:  

Year:  2007        PMID: 21200790      PMCID: PMC2915284          DOI: 10.1107/S1600536807064793

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous structure determinations, see: Dunitz & Strickler (1965 ▶, 1966 ▶). For the isostructural cyclo­hexane-1,4-diammonium dibromide, see: Rademeyer (2006 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Rademeyer (2006 ▶).

Experimental

Crystal data

C6H16N2 2+·2Cl− M = 187.11 Monoclinic, a = 5.2550 (11) Å b = 14.890 (3) Å c = 6.3604 (12) Å β = 99.824 (18)° V = 490.39 (16) Å3 Z = 2 Mo Kα radiation μ = 0.60 mm−1 T = 293 (2) K 0.30 × 0.24 × 0.20 mm

Data collection

Stoe STADI CCD diffractometer Absorption correction: none 13502 measured reflections 1766 independent reflections 1562 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.072 S = 1.03 1766 reflections 79 parameters All H-atom parameters refined Δρmax = 0.41 e Å−3 Δρmin = −0.28 e Å−3 Data collection: CrysAlis CCD (Kuma Diffraction, 2000 ▶); cell refinement: CrysAlis RED (Kuma Diffraction, 2000 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807064793/gd2030sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807064793/gd2030Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H16N22+·2ClF000 = 200
Mr = 187.11Dx = 1.267 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
a = 5.2550 (11) ÅCell parameters from 1610 reflections
b = 14.890 (3) Åθ = 4.8–17.4º
c = 6.3604 (12) ŵ = 0.60 mm1
β = 99.824 (18)ºT = 293 (2) K
V = 490.39 (16) Å3Block, colourless
Z = 20.30 × 0.24 × 0.20 mm
Stoe STADI CCD diffractometer1562 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.043
Monochromator: graphiteθmax = 32.5º
T = 293(2) Kθmin = 4.3º
ω scansh = −7→7
Absorption correction: nonek = −22→22
13502 measured reflectionsl = −8→9
1766 independent reflections
Refinement on F2Hydrogen site location: difference Fourier map
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.038  w = 1/[σ2(Fo2) + 0.3P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.072(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.41 e Å3
1766 reflectionsΔρmin = −0.28 e Å3
79 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.174 (6)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.46825 (6)0.15413 (2)0.46296 (5)0.03915 (12)
N10.5260 (2)0.34260 (8)0.24820 (19)0.0338 (2)
H10.522 (3)0.2870 (13)0.316 (3)0.051 (5)*
H20.642 (4)0.3377 (12)0.168 (3)0.057 (5)*
H30.377 (4)0.3498 (12)0.163 (3)0.050 (5)*
C10.6023 (3)0.50463 (8)0.3001 (2)0.0335 (3)
H110.448 (3)0.5150 (11)0.198 (3)0.041 (4)*
H120.738 (4)0.5022 (11)0.221 (3)0.043 (4)*
C20.5751 (2)0.41590 (8)0.41008 (18)0.0281 (2)
H210.726 (3)0.4018 (10)0.503 (2)0.029 (3)*
C30.3565 (3)0.41864 (9)0.5386 (2)0.0358 (3)
H310.203 (3)0.4276 (11)0.445 (3)0.042 (4)*
H320.355 (3)0.3590 (11)0.613 (3)0.044 (4)*
U11U22U33U12U13U23
Cl10.03850 (18)0.03987 (18)0.04168 (19)−0.00250 (12)0.01427 (13)0.00190 (13)
N10.0361 (5)0.0330 (5)0.0350 (5)−0.0006 (4)0.0137 (4)−0.0018 (4)
C10.0416 (6)0.0331 (6)0.0301 (6)−0.0022 (5)0.0179 (5)0.0026 (4)
C20.0275 (5)0.0315 (5)0.0267 (5)0.0006 (4)0.0082 (4)0.0021 (4)
C30.0394 (6)0.0341 (6)0.0390 (6)−0.0078 (5)0.0211 (5)−0.0008 (5)
N1—C21.4924 (16)C2—C31.5201 (16)
C1—C21.5130 (17)C2—H210.928 (15)
C1—C3i1.5259 (18)C3—C1i1.5259 (18)
C1—H110.959 (17)C3—H310.927 (17)
C1—H120.941 (19)C3—H321.008 (17)
C2—N1—H1110.2 (11)N1—C2—C3109.47 (10)
C2—N1—H2114.4 (13)N1—C2—C1109.79 (10)
H1—N1—H2105.8 (16)C3—C2—C1111.39 (10)
C2—N1—H3111.6 (12)N1—C2—H21107.7 (9)
H1—N1—H3107.8 (16)C3—C2—H21107.6 (9)
H2—N1—H3106.8 (18)C1—C2—H21110.8 (9)
C2—C1—C3i110.91 (10)C2—C3—C1i110.36 (10)
C2—C1—H11108.6 (10)C2—C3—H31108.1 (11)
C3i—C1—H11110.0 (10)C1i—C3—H31109.5 (10)
C2—C1—H12110.8 (10)C2—C3—H32107.4 (10)
C3i—C1—H12110.9 (10)C1i—C3—H32110.8 (10)
H11—C1—H12105.6 (15)H31—C3—H32110.6 (15)
C3i—C1—C2—N1178.07 (10)N1—C2—C3—C1i−177.94 (11)
C3i—C1—C2—C356.65 (16)C1—C2—C3—C1i−56.34 (16)
D—H···AD—HH···AD···AD—H···A
N1—H3···Cl1ii0.88 (2)2.30 (2)3.1734 (15)170.3 (16)
N1—H2···Cl1iii0.86 (2)2.33 (2)3.1833 (13)171.9 (17)
N1—H1···Cl10.93 (2)2.23 (2)3.1584 (13)173.9 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H3⋯Cl1ii0.88 (2)2.30 (2)3.1734 (15)170.3 (16)
N1—H2⋯Cl1iii0.86 (2)2.33 (2)3.1833 (13)171.9 (17)
N1—H1⋯Cl10.93 (2)2.23 (2)3.1584 (13)173.9 (16)

Symmetry codes: (ii) ; (iii) .

  1 in total

1.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01
  1 in total
  1 in total

1.  (Dimethyl-phosphor-yl)methanaminium chloride.

Authors:  Guido J Reiss; Stefan Jörgens
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.