Literature DB >> 23723764

Pseudosymmetric fac-di-aqua-trichlorido[(di-methyl-phosphor-yl)methanaminium-κO]manganese(II).

Guido J Reiss1.   

Abstract

In the title compound, [Mn(C3H11NOP)Cl3(H2O)2], the Mn(II) metal center has a distorted o-cta-hedral geometry, coordinated by the three chloride ligands showing a facial arrangement. Two water mol-ecules and the O-coordinated dpmaH cation [dpmaH = (di-methyl-phosphor-yl)methanaminium] complete the coordination sphere. Each complex mol-ecule is connected to its neighbours by O-H⋯Cl and N-H⋯Cl hydrogen bonds. Two of the chloride ligands and the two water ligands form a hydrogen-bonded polymeric sheet in the ab plane. Furthermore, these planes are connected to adjacent planes by hydrogen bonds from the aminium function of cationic dpmaH ligand. A pseudo-mirror plane perpendicular to the b axis in the chiral space group P21 is observed together with inversion twinning [ratio = 0.864 (5):0.136 (5)].

Entities:  

Year:  2013        PMID: 23723764      PMCID: PMC3647798          DOI: 10.1107/S1600536813008751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related dpma compounds, see: Borisov et al. (1994 ▶); Kochel (2009 ▶); Reiss & Jörgens (2012 ▶). For a definition of the term tecton, see: Brunet et al. (1997 ▶). For the use of anionic phosphinic acid derivatives as supra­molecular tectons, see: Glidewell et al. (2000 ▶); Chen et al. (2010 ▶). For related methyl­phosphinic acids and derivatives, see: Reiss & Engel (2008 ▶); Meyer et al. (2010 ▶). For graph-set theory and its applications, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Grell et al. (2002 ▶). For related manganese complexes, see: Głowiak & Sawka-Dobrowolska (1977 ▶); Feist et al. (1997 ▶); Kubíček et al. (2003 ▶); Karthikeyan et al. (2011 ▶). For manganese complexes as model system for metalloproteins, see: Wieghardt (1989 ▶). For examples of pseudo-symmetry, see: Jones et al. (1988 ▶); Reiss (2002a ▶,b ▶); Reiss & Konietzny (2002 ▶); Ruck (2000 ▶).

Experimental

Crystal data

[Mn(C3H11NOP)Cl3(H2O)2] M = 305.42 Monoclinic, a = 6.3535 (3) Å b = 10.7304 (6) Å c = 8.5629 (4) Å β = 99.490 (2)° V = 575.79 (5) Å3 Z = 2 Mo Kα radiation μ = 1.95 mm−1 T = 290 K 0.41 × 0.30 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.723, T max = 0.980 29900 measured reflections 4538 independent reflections 4518 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.014 wR(F 2) = 0.038 S = 1.11 4538 reflections 149 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.29 e Å−3 Absolute structure: Flack (1983 ▶), 2165 Friedel pairs Flack parameter: 0.136 (5) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2011) ▶; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813008751/gg2113sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008751/gg2113Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813008751/gg2113Isup3.mol Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C3H11NOP)Cl3(H2O)2]F(000) = 310
Mr = 305.42Dx = 1.762 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 9869 reflections
a = 6.3535 (3) Åθ = 3.1–33.6°
b = 10.7304 (6) ŵ = 1.95 mm1
c = 8.5629 (4) ÅT = 290 K
β = 99.490 (2)°Block, colourless
V = 575.79 (5) Å30.41 × 0.30 × 0.26 mm
Z = 2
Bruker APEXII CCD diffractometer4538 independent reflections
Radiation source: fine-focus sealed tube4518 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 33.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −9→9
Tmin = 0.723, Tmax = 0.980k = −16→16
29900 measured reflectionsl = −13→13
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.014w = 1/[σ2(Fo2) + (0.0222P)2 + 0.0303P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.038(Δ/σ)max = 0.001
S = 1.11Δρmax = 0.49 e Å3
4538 reflectionsΔρmin = −0.29 e Å3
149 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
5 restraintsExtinction coefficient: 0.273 (3)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 2165 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.136 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.004766 (16)0.500568 (11)−0.133762 (11)0.01871 (3)
Cl10.24906 (3)0.33264 (2)−0.20350 (3)0.02689 (4)
Cl2−0.18984 (3)0.51538 (2)−0.41916 (2)0.02810 (5)
Cl30.27145 (3)0.673730 (19)−0.17200 (3)0.02618 (4)
P10.27696 (3)0.49973 (2)0.251182 (18)0.01833 (4)
O10.09298 (10)0.47944 (7)0.11869 (7)0.02894 (13)
N10.09847 (14)0.31507 (8)0.40879 (10)0.02992 (15)
H110.025 (3)0.3676 (17)0.467 (2)0.047 (5)*
H120.114 (3)0.2472 (18)0.452 (3)0.054 (5)*
H130.017 (3)0.2997 (16)0.315 (2)0.039 (4)*
O1W−0.21359 (12)0.65566 (7)−0.09214 (9)0.02909 (14)
O2W−0.24546 (13)0.36541 (8)−0.10488 (9)0.03152 (14)
H1O−0.3455 (15)0.645 (2)−0.121 (2)0.057 (6)*
H2O−0.199 (3)0.6966 (14)−0.0049 (13)0.039 (4)*
H3O−0.3747 (15)0.365 (2)−0.135 (2)0.058 (6)*
H4O−0.247 (4)0.325 (2)−0.0213 (19)0.079 (7)*
C10.30694 (15)0.36461 (8)0.38191 (10)0.02448 (15)
H11A0.38370.29980.33580.040 (4)*
H12A0.39090.38790.48280.027 (3)*
C20.2410 (2)0.62945 (10)0.37378 (13)0.0359 (2)
H210.22400.70390.31080.100 (9)*
H220.36360.63780.45520.096 (9)*
H230.11610.61660.42140.099 (9)*
C30.52844 (13)0.51400 (13)0.18863 (10)0.03147 (18)
H310.55000.44430.12270.090 (9)*
H320.63930.51550.27960.080 (6)*
H330.53220.58990.12970.058 (6)*
U11U22U33U12U13U23
Mn10.01908 (5)0.02042 (5)0.01630 (5)−0.00011 (4)0.00192 (3)0.00049 (4)
Cl10.02524 (9)0.02786 (9)0.02755 (8)0.00643 (7)0.00433 (6)0.00031 (7)
Cl20.02977 (8)0.03377 (11)0.01848 (7)−0.00040 (7)−0.00279 (6)−0.00007 (6)
Cl30.02148 (8)0.02487 (9)0.03136 (9)−0.00303 (6)0.00192 (6)0.00126 (7)
P10.02142 (7)0.02078 (7)0.01289 (6)−0.00034 (7)0.00309 (5)0.00136 (7)
O10.0264 (3)0.0411 (4)0.0174 (2)−0.0039 (2)−0.00188 (19)0.0042 (2)
N10.0326 (4)0.0270 (3)0.0289 (3)−0.0090 (3)0.0016 (3)0.0044 (3)
O1W0.0248 (3)0.0324 (3)0.0302 (3)0.0055 (2)0.0050 (2)−0.0052 (3)
O2W0.0267 (3)0.0393 (4)0.0281 (3)−0.0097 (3)0.0033 (2)0.0044 (3)
C10.0276 (4)0.0229 (3)0.0220 (3)−0.0003 (3)0.0015 (3)0.0050 (2)
C20.0516 (6)0.0257 (4)0.0328 (4)0.0026 (4)0.0135 (4)−0.0048 (3)
C30.0238 (3)0.0482 (6)0.0234 (3)−0.0028 (4)0.0067 (2)0.0035 (4)
Mn1—O12.1538 (6)N1—H130.899 (17)
Mn1—O2W2.1959 (8)O1W—H1O0.841 (9)
Mn1—O1W2.2326 (7)O1W—H2O0.858 (9)
Mn1—Cl12.5137 (3)O2W—H3O0.820 (9)
Mn1—Cl22.5554 (2)O2W—H4O0.836 (9)
Mn1—Cl32.5717 (3)C1—H11A0.9700
P1—O11.5046 (6)C1—H12A0.9700
P1—C31.7735 (8)C2—H210.9600
P1—C21.7806 (10)C2—H220.9600
P1—C11.8225 (8)C2—H230.9600
N1—C11.4800 (12)C3—H310.9600
N1—H110.928 (19)C3—H320.9600
N1—H120.82 (2)C3—H330.9600
O1—Mn1—O2W83.73 (3)H11—N1—H13109.2 (15)
O1—Mn1—O1W89.08 (3)H12—N1—H13104.7 (18)
O2W—Mn1—O1W89.65 (3)Mn1—O1W—H1O118.0 (15)
O1—Mn1—Cl195.41 (2)Mn1—O1W—H2O122.5 (11)
O2W—Mn1—Cl192.30 (2)H1O—O1W—H2O106.6 (17)
O1W—Mn1—Cl1175.27 (2)Mn1—O2W—H3O132.3 (15)
O1—Mn1—Cl2166.216 (19)Mn1—O2W—H4O123.2 (17)
O2W—Mn1—Cl284.47 (2)H3O—O2W—H4O97 (2)
O1W—Mn1—Cl283.74 (2)N1—C1—P1112.07 (6)
Cl1—Mn1—Cl292.163 (8)N1—C1—H11A109.2
O1—Mn1—Cl397.814 (19)P1—C1—H11A109.2
O2W—Mn1—Cl3174.88 (2)N1—C1—H12A109.2
O1W—Mn1—Cl385.50 (2)P1—C1—H12A109.2
Cl1—Mn1—Cl392.413 (8)H11A—C1—H12A107.9
Cl2—Mn1—Cl393.346 (8)P1—C2—H21109.5
O1—P1—C3114.29 (4)P1—C2—H22109.5
O1—P1—C2113.48 (5)H21—C2—H22109.5
C3—P1—C2108.67 (6)P1—C2—H23109.5
O1—P1—C1109.73 (4)H21—C2—H23109.5
C3—P1—C1104.24 (5)H22—C2—H23109.5
C2—P1—C1105.69 (4)P1—C3—H31109.5
P1—O1—Mn1141.52 (4)P1—C3—H32109.5
C1—N1—H11113.9 (11)H31—C3—H32109.5
C1—N1—H12110.3 (14)P1—C3—H33109.5
H11—N1—H12109.2 (18)H31—C3—H33109.5
C1—N1—H13109.1 (11)H32—C3—H33109.5
C3—P1—O1—Mn1−19.09 (9)Cl2—Mn1—O1—P1−168.19 (4)
C2—P1—O1—Mn1106.29 (8)Cl3—Mn1—O1—P1−24.42 (7)
C1—P1—O1—Mn1−135.75 (7)O1—P1—C1—N1−40.28 (7)
O2W—Mn1—O1—P1160.50 (8)C3—P1—C1—N1−163.10 (7)
O1W—Mn1—O1—P1−109.76 (8)C2—P1—C1—N182.43 (8)
Cl1—Mn1—O1—P168.77 (7)
D—H···AD—HH···AD···AD—H···A
N1—H11···Cl2i0.928 (19)2.402 (19)3.3220 (10)171.3 (15)
N1—H12···Cl2ii0.82 (2)2.56 (2)3.2664 (9)145.9 (19)
N1—H13···Cl3ii0.899 (17)2.436 (17)3.2193 (8)145.8 (14)
O1W—H1O···Cl3iii0.84 (1)2.42 (1)3.2360 (8)164 (2)
O1W—H2O···Cl1iv0.86 (1)2.37 (1)3.2021 (7)164 (2)
O2W—H3O···Cl1iii0.82 (1)2.39 (1)3.2026 (8)171 (2)
O2W—H4O···Cl3ii0.84 (1)2.35 (1)3.1635 (8)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H11⋯Cl2i 0.928 (19)2.402 (19)3.3220 (10)171.3 (15)
N1—H12⋯Cl2ii 0.82 (2)2.56 (2)3.2664 (9)145.9 (19)
N1—H13⋯Cl3ii 0.899 (17)2.436 (17)3.2193 (8)145.8 (14)
O1W—H1O⋯Cl3iii 0.84 (1)2.42 (1)3.2360 (8)164 (2)
O1W—H2O⋯Cl1iv 0.86 (1)2.37 (1)3.2021 (7)164 (2)
O2W—H3O⋯Cl1iii 0.82 (1)2.39 (1)3.2026 (8)171 (2)
O2W—H4O⋯Cl3ii 0.84 (1)2.35 (1)3.1635 (8)166 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  A structural hierarchy in the hydrogen-bonded adduct ethane-1,2-diphosphonic acid-4,4'-bipyridyl-water (1/1/2): an N-component N-dimensional structure (N = 3) with substructures having N = 1 and 2

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-07       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Ethane-1,2-diylbis(methyl-phosphinic acid).

Authors:  Guido J Reiss; Judith S Engel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-09

5.  Diaqua-dichloridobis(pyridine-κN)manganese(II).

Authors:  M Karthikeyan; S Karthikeyan; Bala Manimaran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

6.  (Dimethyl-phosphor-yl)methanaminium chloride.

Authors:  Guido J Reiss; Stefan Jörgens
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-08
  6 in total
  4 in total

1.  (Di-methyl-phosphor-yl)methanaminium hydrogen oxalate-oxalic acid (2/1).

Authors:  Sebastian Bialek; Rebecca Clemens; Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-15

2.  Bis[(di-methyl-phosphor-yl)methan-amin-ium] tetra-chlorido-palladate(II).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19

3.  (Di-methyl-phosphor-yl)methanaminium nitrate.

Authors:  Claudia M Bianga; Julia Eggeling; Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-16

4.  (Di-methyl-phosphor-yl)methanaminium iodide-(di-methyl-phosphor-yl)methan-amine (1/1).

Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-13
  4 in total

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