Literature DB >> 23723763

trans-Dichlorido-tetra-kis-[(di-methyl-phosphor-yl)methanaminium-κO]cobalt(II) tetra-chloridocobaltate(II).

Guido J Reiss1.   

Abstract

The asymmetric unit of the title structure, [CoCl2(C3H11NOP)4][CoCl4]2, consists of one half of the trans-dichlorido-tetra-kis-[(di-methyl-phosphor-yl)methanaminium]cobalt(II) tetra-cation lying on an inversion center and one tetra-chloridocobaltate(II) dianion on a general position. Four O-coordinated cationic (di-methyl-phosphor-yl)methanaminium (dpmaH(+)) ligands occupy the equatorial coordination sites, whereas the chloride ligands occupy axial positions of the roughly o-cta-hedral coordination polyhedron of the cobalt metal center. Intra-molecular hydrogen bonds between the aminium groups and the O atom of the phosphoryl groups and additional hydrogen bonds between the aminium groups and the chloride ligands are present. Furthermore, four of the six H atoms not involved in intra-molecular bonding of each cobalt(II) tetra-cation form weak hydrogen bonds to four adjacent tetra-chloridocobaltate(II) counter-anions. By these inter-molecular hydrogen bonds, one-dimensional polymeric strands are formed along the b-axis direction. The hydrogen bonding is analyzed using the graph-set method and the structural similarity with dpmaHCl is discussed.

Entities:  

Year:  2013        PMID: 23723763      PMCID: PMC3647797          DOI: 10.1107/S1600536813008945

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related dpma compounds, see: Dodoff et al. (1990 ▶); Borisov et al. (1994 ▶); Trendafilova et al. (1997 ▶); Kochel (2009 ▶); Reiss & Jörgens (2012 ▶); van Megen et al. (2013 ▶). For a definition of the term tecton, see: Brunet et al. (1997 ▶). For related methyl­phosphinic acids and their derivatives, see: Reiss & Engel (2008 ▶); Meyer et al. (2010 ▶). For graph-set theory and its applications, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Grell et al. (2002 ▶). For related cobalt complexes, see: Kubíčk et al. (2003 ▶); Girma et al. (2005 ▶); Guzei et al. (2010 ▶).

Experimental

Crystal data

[CoCl2(C3H11NOP)4][CoCl4]2 M = 963.68 Triclinic, a = 7.7748 (3) Å b = 11.1557 (5) Å c = 12.1205 (5) Å α = 110.738 (4)° β = 97.688 (4)° γ = 104.331 (5)° V = 923.66 (8) Å3 Z = 1 Mo Kα radiation μ = 2.25 mm−1 T = 173 K 0.76 × 0.33 × 0.08 mm

Data collection

Oxford Xcalibur diffractometer Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009 ▶), based on expressions derived by Clark & Reid (1995 ▶)] T min = 0.402, T max = 0.838 15687 measured reflections 4920 independent reflections 4552 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.018 wR(F 2) = 0.042 S = 1.09 4920 reflections 197 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.49 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813008945/sj5313sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813008945/sj5313Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CoCl2(C3H11NOP)4][CoCl4]2Z = 1
Mr = 963.68F(000) = 487
Triclinic, P1Dx = 1.732 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7748 (3) ÅCell parameters from 13303 reflections
b = 11.1557 (5) Åθ = 2.9–32.6°
c = 12.1205 (5) ŵ = 2.25 mm1
α = 110.738 (4)°T = 173 K
β = 97.688 (4)°Block, blue
γ = 104.331 (5)°0.76 × 0.33 × 0.08 mm
V = 923.66 (8) Å3
Oxford Xcalibur diffractometer4920 independent reflections
Graphite monochromator4552 reflections with I > 2σ(I)
Detector resolution: 16.2711 pixels mm-1Rint = 0.020
ω scansθmax = 29.0°, θmin = 2.9°
Absorption correction: analytical [CrysAlis PRO (Oxford Diffraction, 2009), based on expressions derived by Clark & Reid (1995)]h = −10→10
Tmin = 0.402, Tmax = 0.838k = −15→15
15687 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018Hydrogen site location: difference Fourier map
wR(F2) = 0.042H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.012P)2 + 0.5P], where P = (Fo2 + 2Fc2)/3
4920 reflections(Δ/σ)max = 0.001
197 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.34.44 Analytical numeric absorption correction using a multifaceted crystal model based on expressions derived by R.C. Clark & J.S. Reid. (Clark & Reid, 1995).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Co10.00000.00000.50000.00707 (5)
Cl1−0.22848 (4)0.05961 (3)0.61151 (3)0.01037 (6)
P10.27356 (4)−0.01270 (3)0.73117 (3)0.00824 (6)
C110.48106 (18)0.09673 (14)0.84045 (13)0.0149 (3)
H11A0.57140.12380.79970.022*
H11B0.52410.05030.88580.022*
H11C0.45990.17530.89490.022*
C120.31916 (19)−0.15805 (14)0.63526 (13)0.0149 (3)
H12A0.2069−0.22290.58000.022*
H12B0.3725−0.19730.68410.022*
H12C0.4027−0.13230.58990.022*
C130.11865 (17)−0.06627 (14)0.81714 (12)0.0117 (2)
H13A0.1385−0.14370.82930.014*
H13B0.14170.00640.89630.014*
N1−0.07340 (15)−0.10285 (12)0.74832 (11)0.0112 (2)
H11−0.093 (2)−0.0313 (19)0.7437 (17)0.022 (5)*
H12−0.094 (3)−0.162 (2)0.6731 (19)0.026 (5)*
H13−0.149 (3)−0.1352 (19)0.7854 (18)0.024 (5)*
O10.18513 (12)0.05528 (9)0.66322 (8)0.00960 (17)
P20.25797 (4)0.32277 (3)0.61086 (3)0.00895 (6)
C210.2810 (2)0.47433 (13)0.58704 (13)0.0158 (3)
H21A0.30160.46030.50770.024*
H21B0.38270.54610.64770.024*
H21C0.17100.49810.59290.024*
C220.47331 (18)0.29394 (14)0.61459 (13)0.0152 (3)
H22A0.45930.20390.60920.023*
H22B0.55910.35810.68940.023*
H22C0.51770.30430.54720.023*
C230.22948 (18)0.36089 (13)0.76527 (12)0.0119 (2)
H23A0.26370.29670.79330.014*
H23B0.31220.45040.81830.014*
N20.03979 (16)0.35581 (12)0.77545 (11)0.0122 (2)
H210.003 (2)0.4202 (18)0.7562 (17)0.019 (4)*
H22−0.041 (2)0.2708 (19)0.7275 (17)0.018 (4)*
H230.035 (3)0.3711 (19)0.8492 (19)0.026 (5)*
O20.10036 (12)0.20618 (9)0.51575 (8)0.00961 (17)
Co20.17901 (2)0.34799 (2)0.10713 (2)0.01000 (4)
Cl210.08194 (5)0.41433 (3)0.28405 (3)0.01496 (7)
Cl220.27225 (5)0.53299 (3)0.06796 (3)0.01464 (7)
Cl230.38534 (4)0.24331 (3)0.14315 (3)0.01438 (7)
Cl24−0.04975 (4)0.19017 (3)−0.05026 (3)0.01361 (6)
U11U22U33U12U13U23
Co10.00685 (11)0.00721 (11)0.00612 (11)0.00138 (8)0.00071 (9)0.00240 (9)
Cl10.00962 (13)0.01193 (13)0.00975 (14)0.00396 (11)0.00322 (11)0.00394 (11)
P10.00786 (14)0.00935 (14)0.00738 (15)0.00274 (11)0.00126 (11)0.00342 (12)
C110.0116 (6)0.0186 (7)0.0110 (6)0.0019 (5)−0.0005 (5)0.0053 (5)
C120.0174 (7)0.0158 (6)0.0134 (7)0.0098 (5)0.0037 (5)0.0050 (5)
C130.0104 (6)0.0144 (6)0.0115 (6)0.0030 (5)0.0023 (5)0.0073 (5)
N10.0106 (5)0.0111 (5)0.0128 (6)0.0026 (4)0.0036 (4)0.0060 (5)
O10.0100 (4)0.0099 (4)0.0087 (4)0.0029 (3)0.0014 (3)0.0040 (3)
P20.00928 (15)0.00761 (14)0.00711 (15)0.00123 (11)0.00126 (12)0.00099 (12)
C210.0194 (7)0.0099 (6)0.0156 (7)0.0016 (5)0.0030 (5)0.0048 (5)
C220.0098 (6)0.0157 (6)0.0147 (7)0.0026 (5)0.0017 (5)0.0015 (5)
C230.0132 (6)0.0131 (6)0.0086 (6)0.0059 (5)0.0020 (5)0.0027 (5)
N20.0149 (6)0.0124 (5)0.0101 (6)0.0047 (4)0.0046 (5)0.0045 (5)
O20.0094 (4)0.0082 (4)0.0087 (4)0.0008 (3)0.0005 (3)0.0024 (3)
Co20.01132 (8)0.00894 (8)0.00817 (8)0.00225 (6)0.00091 (7)0.00285 (7)
Cl210.02275 (16)0.01359 (14)0.01120 (15)0.00812 (12)0.00686 (12)0.00548 (12)
Cl220.01898 (16)0.01075 (14)0.01158 (15)0.00080 (12)0.00219 (12)0.00476 (12)
Cl230.01173 (14)0.01845 (15)0.01554 (16)0.00614 (12)0.00327 (12)0.00890 (13)
Cl240.01358 (14)0.01152 (14)0.01105 (15)0.00125 (11)−0.00131 (11)0.00264 (12)
Co1—O1i2.0737 (9)N1—H130.87 (2)
Co1—O12.0737 (9)P2—O21.5144 (9)
Co1—O2i2.1671 (9)P2—C221.7791 (14)
Co1—O22.1671 (9)P2—C211.7843 (14)
Co1—Cl1i2.4525 (3)P2—C231.8238 (14)
Co1—Cl12.4526 (3)C21—H21A0.9600
P1—O11.5083 (9)C21—H21B0.9600
P1—C111.7763 (14)C21—H21C0.9600
P1—C121.7794 (14)C22—H22A0.9600
P1—C131.8204 (13)C22—H22B0.9600
C11—H11A0.9600C22—H22C0.9600
C11—H11B0.9600C23—N21.4852 (17)
C11—H11C0.9600C23—H23A0.9700
C12—H12A0.9600C23—H23B0.9700
C12—H12B0.9600N2—H210.924 (19)
C12—H12C0.9600N2—H220.920 (19)
C13—N11.4886 (17)N2—H230.86 (2)
C13—H13A0.9700Co2—Cl222.2485 (4)
C13—H13B0.9700Co2—Cl242.2507 (4)
N1—H110.867 (19)Co2—Cl232.2866 (4)
N1—H120.88 (2)Co2—Cl212.3024 (4)
O1i—Co1—O1180.00 (4)C13—N1—H13109.9 (13)
O1i—Co1—O2i88.92 (3)H11—N1—H13109.5 (17)
O1—Co1—O2i91.08 (3)H12—N1—H13109.9 (17)
O1i—Co1—O291.08 (3)P1—O1—Co1138.08 (6)
O1—Co1—O288.92 (3)O2—P2—C22113.83 (6)
O2i—Co1—O2180.0O2—P2—C21111.21 (6)
O1i—Co1—Cl1i89.89 (3)C22—P2—C21107.23 (7)
O1—Co1—Cl1i90.11 (3)O2—P2—C23112.87 (6)
O2i—Co1—Cl1i89.54 (3)C22—P2—C23104.79 (6)
O2—Co1—Cl1i90.46 (3)C21—P2—C23106.37 (6)
O1i—Co1—Cl190.11 (3)P2—C21—H21A109.5
O1—Co1—Cl189.88 (3)P2—C21—H21B109.5
O2i—Co1—Cl190.46 (3)H21A—C21—H21B109.5
O2—Co1—Cl189.54 (3)P2—C21—H21C109.5
Cl1i—Co1—Cl1180.0H21A—C21—H21C109.5
O1—P1—C11113.52 (6)H21B—C21—H21C109.5
O1—P1—C12113.89 (6)P2—C22—H22A109.5
C11—P1—C12107.60 (7)P2—C22—H22B109.5
O1—P1—C13108.03 (6)H22A—C22—H22B109.5
C11—P1—C13105.63 (6)P2—C22—H22C109.5
C12—P1—C13107.70 (7)H22A—C22—H22C109.5
P1—C11—H11A109.5H22B—C22—H22C109.5
P1—C11—H11B109.5N2—C23—P2113.44 (9)
H11A—C11—H11B109.5N2—C23—H23A108.9
P1—C11—H11C109.5P2—C23—H23A108.9
H11A—C11—H11C109.5N2—C23—H23B108.9
H11B—C11—H11C109.5P2—C23—H23B108.9
P1—C12—H12A109.5H23A—C23—H23B107.7
P1—C12—H12B109.5C23—N2—H21112.8 (11)
H12A—C12—H12B109.5C23—N2—H22110.3 (11)
P1—C12—H12C109.5H21—N2—H22110.3 (16)
H12A—C12—H12C109.5C23—N2—H23108.5 (13)
H12B—C12—H12C109.5H21—N2—H23107.4 (17)
N1—C13—P1108.91 (9)H22—N2—H23107.3 (17)
N1—C13—H13A109.9P2—O2—Co1128.45 (5)
P1—C13—H13A109.9Cl22—Co2—Cl24108.699 (15)
N1—C13—H13B109.9Cl22—Co2—Cl23119.352 (15)
P1—C13—H13B109.9Cl24—Co2—Cl23106.345 (14)
H13A—C13—H13B108.3Cl22—Co2—Cl21106.654 (14)
C13—N1—H11109.2 (12)Cl24—Co2—Cl21111.513 (15)
C13—N1—H12111.8 (12)Cl23—Co2—Cl21104.233 (14)
H11—N1—H12106.4 (17)
O1—P1—C13—N132.47 (10)O2—P2—C23—N2−41.65 (11)
C11—P1—C13—N1154.27 (9)C22—P2—C23—N2−166.05 (9)
C12—P1—C13—N1−90.96 (10)C21—P2—C23—N280.57 (10)
C11—P1—O1—Co1158.09 (8)C22—P2—O2—Co160.81 (9)
C12—P1—O1—Co134.48 (10)C21—P2—O2—Co1−177.94 (7)
C13—P1—O1—Co1−85.12 (9)C23—P2—O2—Co1−58.48 (8)
D—H···AD—HH···AD···AD—H···A
N1—H11···Cl10.867 (19)2.437 (19)3.1879 (12)145.3 (16)
N1—H11···Cl24ii0.867 (19)2.730 (19)3.2573 (13)120.5 (15)
N1—H12···O2i0.88 (2)2.16 (2)2.9504 (16)150.3 (17)
N1—H13···Cl23i0.87 (2)2.38 (2)3.2403 (12)171.3 (17)
N2—H22···Cl10.920 (19)2.250 (19)3.1697 (13)177.8 (15)
N2—H21···Cl21iii0.924 (19)2.288 (19)3.2124 (12)177.8 (16)
N2—H23···Cl22ii0.86 (2)2.71 (2)3.3612 (13)134.0 (16)
N2—H23···Cl24ii0.86 (2)2.70 (2)3.2989 (12)128.1 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H11⋯Cl10.867 (19)2.437 (19)3.1879 (12)145.3 (16)
N1—H11⋯Cl24i 0.867 (19)2.730 (19)3.2573 (13)120.5 (15)
N1—H12⋯O2ii 0.88 (2)2.16 (2)2.9504 (16)150.3 (17)
N1—H13⋯Cl23ii 0.87 (2)2.38 (2)3.2403 (12)171.3 (17)
N2—H22⋯Cl10.920 (19)2.250 (19)3.1697 (13)177.8 (15)
N2—H21⋯Cl21iii 0.924 (19)2.288 (19)3.2124 (12)177.8 (16)
N2—H23⋯Cl22i 0.86 (2)2.71 (2)3.3612 (13)134.0 (16)
N2—H23⋯Cl24i 0.86 (2)2.70 (2)3.2989 (12)128.1 (16)

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Sebastian Bialek; Rebecca Clemens; Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-15

2.  1-(4-Hy-droxy-phen-yl)piperazine-1,4-diium tetra-chlorido-cobalt(II) monohydrate.

Authors:  Marwa Mghandef; Habib Boughzala
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-31

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Authors:  Guido J Reiss
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19

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5.  (Di-methyl-phosphor-yl)methanaminium iodide-(di-methyl-phosphor-yl)methan-amine (1/1).

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  5 in total

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