Literature DB >> 23097429

Alternative polyadenylation: new insights from global analyses.

Yongsheng Shi1.   

Abstract

Recent studies have revealed widespread mRNA alternative polyadenylation (APA) in eukaryotes and its dynamic spatial and temporal regulation. APA not only generates proteomic and functional diversity, but also plays important roles in regulating gene expression. Global deregulation of APA has been demonstrated in a variety of human diseases. Recent exciting advances in the field have been made possible in a large part by high throughput analyses using newly developed experimental tools. Here I review the recent progress in global studies of APA and the insights that have emerged from these and other studies that use more conventional methods.

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Year:  2012        PMID: 23097429      PMCID: PMC3504663          DOI: 10.1261/rna.035899.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  115 in total

1.  Alternative polyadenylation events contribute to the induction of NF-ATc in effector T cells.

Authors:  S Chuvpilo; M Zimmer; A Kerstan; J Glöckner; A Avots; C Escher; C Fischer; I Inashkina; E Jankevics; F Berberich-Siebelt; E Schmitt; E Serfling
Journal:  Immunity       Date:  1999-02       Impact factor: 31.745

Review 2.  Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.

Authors:  J Zhao; L Hyman; C Moore
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

Review 3.  Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression.

Authors:  Carol S Lutz; Alexandra Moreira
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-09-20       Impact factor: 9.957

Review 4.  Control of poly(A) tail length.

Authors:  Christian R Eckmann; Christiane Rammelt; Elmar Wahle
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-11-17       Impact factor: 9.957

Review 5.  Pre-mRNA 3'-end processing complex assembly and function.

Authors:  Serena Chan; Eun-A Choi; Yongsheng Shi
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-10-18       Impact factor: 9.957

6.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

7.  An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells.

Authors:  Gene W Yeo; Nicole G Coufal; Tiffany Y Liang; Grace E Peng; Xiang-Dong Fu; Fred H Gage
Journal:  Nat Struct Mol Biol       Date:  2009-01-11       Impact factor: 15.369

8.  The tumor suppressor Cdc73 functionally associates with CPSF and CstF 3' mRNA processing factors.

Authors:  Orit Rozenblatt-Rosen; Takashi Nagaike; Joshua M Francis; Syuzo Kaneko; Karen A Glatt; Christina M Hughes; Thomas LaFramboise; James L Manley; Matthew Meyerson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-09       Impact factor: 11.205

9.  Regulation of poly(A) site choice of several yeast mRNAs.

Authors:  K A Sparks; C L Dieckmann
Journal:  Nucleic Acids Res       Date:  1998-10-15       Impact factor: 16.971

10.  Transcriptional activity regulates alternative cleavage and polyadenylation.

Authors:  Zhe Ji; Wenting Luo; Wencheng Li; Mainul Hoque; Zhenhua Pan; Yun Zhao; Bin Tian
Journal:  Mol Syst Biol       Date:  2011-09-27       Impact factor: 11.429

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  110 in total

1.  Evaluation of two statistical methods provides insights into the complex patterns of alternative polyadenylation site switching.

Authors:  Jie Li; Rui Li; Leiming You; Anlong Xu; Yonggui Fu; Shengfeng Huang
Journal:  PLoS One       Date:  2015-04-14       Impact factor: 3.240

2.  Role of alternative polyadenylation in epigenetic silencing and antisilencing.

Authors:  Liuyin Ma; Cheng Guo; Qingshun Quinn Li
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-13       Impact factor: 11.205

Review 3.  Alternative cleavage and polyadenylation: extent, regulation and function.

Authors:  Ran Elkon; Alejandro P Ugalde; Reuven Agami
Journal:  Nat Rev Genet       Date:  2013-07       Impact factor: 53.242

4.  Global insights into alternative polyadenylation regulation.

Authors:  Ranjan Batra; Mini Manchanda; Maurice S Swanson
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 5.  Implications of polyadenylation in health and disease.

Authors:  Ana Curinha; Sandra Oliveira Braz; Isabel Pereira-Castro; Andrea Cruz; Alexandra Moreira
Journal:  Nucleus       Date:  2014-10-31       Impact factor: 4.197

6.  Suboptimal RNA-RNA interaction limits U1 snRNP inhibition of canonical mRNA 3' processing.

Authors:  Junjie Shi; Yanhui Deng; Shanshan Huang; Chunliu Huang; Jinkai Wang; Andy Peng Xiang; Chengguo Yao
Journal:  RNA Biol       Date:  2019-07-07       Impact factor: 4.652

7.  Alternative polyadenylation coordinates embryonic development, sexual dimorphism and longitudinal growth in Xenopus tropicalis.

Authors:  Xiang Zhou; Yangzi Zhang; Jennifer J Michal; Lujiang Qu; Shuwen Zhang; Mark R Wildung; Weiwei Du; Derek J Pouchnik; Hui Zhao; Yin Xia; Honghua Shi; Guoli Ji; Jon F Davis; Gary D Smith; Michael D Griswold; Richard M Harland; Zhihua Jiang
Journal:  Cell Mol Life Sci       Date:  2019-02-07       Impact factor: 9.261

8.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

Authors:  Lidiya V Boldyreva; Lyubov A Yarinich; Elena N Kozhevnikova; Anton V Ivankin; Mikhail O Lebedev; Alexey V Pindyurin
Journal:  Mol Biol Rep       Date:  2021-01-31       Impact factor: 2.316

9.  U1 snRNP-mediated poly(A) site suppression: beneficial and deleterious for mRNA fate.

Authors:  Jörg Langemeier; Maximilian Radtke; Jens Bohne
Journal:  RNA Biol       Date:  2013-01-16       Impact factor: 4.652

10.  Changes in cellular mRNA stability, splicing, and polyadenylation through HuR protein sequestration by a cytoplasmic RNA virus.

Authors:  Michael D Barnhart; Stephanie L Moon; Alexander W Emch; Carol J Wilusz; Jeffrey Wilusz
Journal:  Cell Rep       Date:  2013-11-07       Impact factor: 9.423

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