Literature DB >> 25484187

Implications of polyadenylation in health and disease.

Ana Curinha1, Sandra Oliveira Braz, Isabel Pereira-Castro, Andrea Cruz, Alexandra Moreira.   

Abstract

Polyadenylation is the RNA processing step that completes the maturation of nearly all eukaryotic mRNAs. It is a two-step nuclear process that involves an endonucleolytic cleavage of the pre-mRNA at the 3'-end and the polymerization of a polyadenosine (polyA) tail, which is fundamental for mRNA stability, nuclear export and efficient translation during development. The core molecular machinery responsible for the definition of a polyA site includes several recognition, cleavage and polyadenylation factors that identify and act on a given polyA signal present in a pre-mRNA, usually an AAUAAA hexamer or similar sequence. This mechanism is tightly regulated by other cis-acting elements and trans-acting factors, and its misregulation can cause inefficient gene expression and may ultimately lead to disease. The majority of genes generate multiple mRNAs as a result of alternative polyadenylation in the 3'-untranslated region. The variable lengths of the 3' untranslated regions created by alternative polyadenylation are a recognizable target for differential regulation and clearly affect the fate of the transcript, ultimately modulating the expression of the gene. Over the past few years, several studies have highlighted the importance of polyadenylation and alternative polyadenylation in gene expression and their impact in a variety of physiological conditions, as well as in several illnesses. Abnormalities in the 3'-end processing mechanisms thus represent a common feature among many oncological, immunological, neurological and hematological disorders, but slight imbalances can lead to the natural establishment of a specific cellular state. This review addresses the key steps of polyadenylation and alternative polyadenylation in different cellular conditions and diseases focusing on the molecular effectors that ensure a faultless pre-mRNA 3' end formation.

Entities:  

Keywords:  3′ untranslated region; 3′READS, 3′ Region Extraction and Deep Sequencing; AD, Alzheimer disease; APA, Alternative polyadenylation; AREs, Au-rich elements; BPV, bovine papilloma virus; CAH, congenital adrenal hyperplasia; CFIm25, Cleavage Factor Im 25 kDa; COX-2, cyclooxygenase 2; CPSF, Cleavage and Polyadenylation Specificity Factor; CSTF2, cleavage stimulatory factor-64kDa; DMKN, dermokine; DSE, downstream sequence element; ESC, embryonic stem cells; FMR1, Fragil X mental retardation 1; FOXP3, forkhead box P3; FXPOI, fragile X-associated immature ovarian insufficiency; FXS, Fragile X syndrome; FXTAS, fragile X-associated tremor/ataxia syndrome; HGRG-14, high-glucose-regulated gene; IMP-1, Insulin-like growth factor 2 mRNA binding protein 1; IPEX, immune dysfunction, polyendocrinopathy, enteropathy, X-linked; LPS, lipopolysaccharide; OPMD, oculopharyngeal muscular dystrophy; PABPN1, poly(A) binding protein; PAP, polyA polymerase; PAS, polyA site; PD, Parkinson disease; PDXK, pyridoxal kinase; PPIE, peptidylpropylisomerase E; RBP, RNA-binding protein; RNA Pol II, RNA polymerase II; SLE, systemic lupus erythematosus; SMA, Spinal Muscular Atrophy; SMN, Survival Motor Neuron; SNP, single nucleotide polymorphism; StAR, steroigogenic acute regulatory; TCF/LEF, T cell factor/lymphoid enhancer factor.; TCF7L2, transcription factor 7-like 2; TCR, T cell receptor; TLI, tandem UTR length index; TNF-α, tumor necrosis factor-α; USE, upstream sequence element; UTR, untranslated region; WAS, Wiskott-Aldrich syndrome; WASP, Wiskott-Aldrich syndrome protein; aSyn, α-Synuclein; aSynL, longest aSyn isoform; alternative polyadenylation; cell state; disease; gene expression; miRNA, microRNA; nuclear 1; pA signal, polyA signal; pA tail, polyA tail; polyadenylation; siRNAs, small interfering RNAs; snRNPs, spliceosomal small nuclear ribonucleoproteins; α-GalA, α-galactosidase A; μ, IgM heavy-chain mRNA

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Year:  2014        PMID: 25484187      PMCID: PMC4615197          DOI: 10.4161/nucl.36360

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  128 in total

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  52 in total

1.  Recent molecular insights into canonical pre-mRNA 3'-end processing.

Authors:  Yadong Sun; Keith Hamilton; Liang Tong
Journal:  Transcription       Date:  2020-06-11

2.  RNA element discovery from germ cell to blastocyst.

Authors:  Molly S Estill; Russ Hauser; Stephen A Krawetz
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

3.  Silencing the cleavage factor CFIm25 as a new strategy to control Entamoeba histolytica parasite.

Authors:  Juan David Ospina-Villa; Nancy Guillén; Cesar Lopez-Camarillo; Jacqueline Soto-Sanchez; Esther Ramirez-Moreno; Raul Garcia-Vazquez; Carlos A Castañon-Sanchez; Abigail Betanzos; Laurence A Marchat
Journal:  J Microbiol       Date:  2017-09-28       Impact factor: 3.422

4.  In vitro labeling strategies for in cellulo fluorescence microscopy of single ribonucleoprotein machines.

Authors:  Thomas C Custer; Nils G Walter
Journal:  Protein Sci       Date:  2017-02-12       Impact factor: 6.725

5.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

Authors:  Lidiya V Boldyreva; Lyubov A Yarinich; Elena N Kozhevnikova; Anton V Ivankin; Mikhail O Lebedev; Alexey V Pindyurin
Journal:  Mol Biol Rep       Date:  2021-01-31       Impact factor: 2.316

6.  The RNA-binding protein, ZC3H14, is required for proper poly(A) tail length control, expression of synaptic proteins, and brain function in mice.

Authors:  Jennifer Rha; Stephanie K Jones; Jonathan Fidler; Ayan Banerjee; Sara W Leung; Kevin J Morris; Jennifer C Wong; George Andrew S Inglis; Lindsey Shapiro; Qiudong Deng; Alicia A Cutler; Adam M Hanif; Machelle T Pardue; Ashleigh Schaffer; Nicholas T Seyfried; Kenneth H Moberg; Gary J Bassell; Andrew Escayg; Paul S García; Anita H Corbett
Journal:  Hum Mol Genet       Date:  2017-10-01       Impact factor: 6.150

7.  Molecular basis for the recognition of the human AAUAAA polyadenylation signal.

Authors:  Yadong Sun; Yixiao Zhang; Keith Hamilton; James L Manley; Yongsheng Shi; Thomas Walz; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-05       Impact factor: 11.205

Review 8.  Polyadenylation site selection: linking transcription and RNA processing via a conserved carboxy-terminal domain (CTD)-interacting protein.

Authors:  Marc Larochelle; Judit Hunyadkürti; François Bachand
Journal:  Curr Genet       Date:  2016-08-31       Impact factor: 3.886

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Authors:  Anita H Corbett
Journal:  Curr Opin Cell Biol       Date:  2018-03-06       Impact factor: 8.382

10.  Stiff matrix instigates type I collagen biogenesis by mammalian cleavage factor I complex-mediated alternative polyadenylation.

Authors:  Zijing Zhou; Jing Qu; Li He; Yi Zhu; Shan-Zhong Yang; Feng Zhang; Ting Guo; Hong Peng; Ping Chen; Yong Zhou
Journal:  JCI Insight       Date:  2020-02-13
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