Literature DB >> 21957020

Pre-mRNA 3'-end processing complex assembly and function.

Serena Chan1, Eun-A Choi, Yongsheng Shi.   

Abstract

The 3'-ends of almost all eukaryotic mRNAs are formed in a two-step process, an endonucleolytic cleavage followed by polyadenylation (the addition of a poly-adenosine or poly(A) tail). These reactions take place in the pre-mRNA 3' processing complex, a macromolecular machinery that consists of more than 20 proteins. A general framework for how the pre-mRNA 3' processing complex assembles and functions has emerged from extensive studies over the past several decades using biochemical, genetic, computational, and structural approaches. In this article, we review what we have learned about this important cellular machine and discuss the remaining questions and future challenges.
Copyright © 2010 John Wiley & Sons, Ltd.

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Year:  2010        PMID: 21957020      PMCID: PMC3980678          DOI: 10.1002/wrna.54

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  116 in total

Review 1.  The spliceosome: design principles of a dynamic RNP machine.

Authors:  Markus C Wahl; Cindy L Will; Reinhard Lührmann
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 2.  Pre-mRNA processing reaches back to transcription and ahead to translation.

Authors:  Melissa J Moore; Nick J Proudfoot
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

3.  Molecular architecture of the human pre-mRNA 3' processing complex.

Authors:  Yongsheng Shi; Dafne Campigli Di Giammartino; Derek Taylor; Ali Sarkeshik; William J Rice; John R Yates; Joachim Frank; James L Manley
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

4.  Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

Authors:  Zhe Ji; Ju Youn Lee; Zhenhua Pan; Bingjun Jiang; Bin Tian
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-16       Impact factor: 11.205

Review 5.  SR proteins in vertical integration of gene expression from transcription to RNA processing to translation.

Authors:  Xiang-Yang Zhong; Pingping Wang; Joonhee Han; Michael G Rosenfeld; Xiang-Dong Fu
Journal:  Mol Cell       Date:  2009-07-10       Impact factor: 17.970

6.  Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells.

Authors:  Christine Mayr; David P Bartel
Journal:  Cell       Date:  2009-08-21       Impact factor: 41.582

7.  A core complex of CPSF73, CPSF100, and Symplekin may form two different cleavage factors for processing of poly(A) and histone mRNAs.

Authors:  Kelly D Sullivan; Mindy Steiniger; William F Marzluff
Journal:  Mol Cell       Date:  2009-05-15       Impact factor: 17.970

8.  Assembly of an export-competent mRNP is needed for efficient release of the 3'-end processing complex after polyadenylation.

Authors:  Xiangping Qu; Søren Lykke-Andersen; Tommy Nasser; Cyril Saguez; Edouard Bertrand; Torben Heick Jensen; Claire Moore
Journal:  Mol Cell Biol       Date:  2009-07-27       Impact factor: 4.272

9.  HIV-1 mRNA 3' end processing is distinctively regulated by eIF3f, CDK11, and splice factor 9G8.

Authors:  Susana T Valente; Greg M Gilmartin; Krishnan Venkatarama; Gloria Arriagada; Stephen P Goff
Journal:  Mol Cell       Date:  2009-10-23       Impact factor: 17.970

10.  Cotranscriptional recruitment of the mRNA export factor Yra1 by direct interaction with the 3' end processing factor Pcf11.

Authors:  Sara Ann Johnson; Gabrielle Cubberley; David L Bentley
Journal:  Mol Cell       Date:  2008-12-24       Impact factor: 17.970

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  66 in total

Review 1.  Alternative polyadenylation: new insights from global analyses.

Authors:  Yongsheng Shi
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

2.  Novel upstream and downstream sequence elements contribute to polyadenylation efficiency.

Authors:  Sarah K Darmon; Carol S Lutz
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

3.  Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression.

Authors:  Amy Pandya-Jones; Dev M Bhatt; Chia-Ho Lin; Ann-Jay Tong; Stephen T Smale; Douglas L Black
Journal:  RNA       Date:  2013-04-24       Impact factor: 4.942

Review 4.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

Review 5.  Delineating the structural blueprint of the pre-mRNA 3'-end processing machinery.

Authors:  Kehui Xiang; Liang Tong; James L Manley
Journal:  Mol Cell Biol       Date:  2014-03-03       Impact factor: 4.272

6.  Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal.

Authors:  Brad Lackford; Chengguo Yao; Georgette M Charles; Lingjie Weng; Xiaofeng Zheng; Eun-A Choi; Xiaohui Xie; Ji Wan; Yi Xing; Johannes M Freudenberg; Pengyi Yang; Raja Jothi; Guang Hu; Yongsheng Shi
Journal:  EMBO J       Date:  2014-03-04       Impact factor: 11.598

Review 7.  The polyadenylation code: a unified model for the regulation of mRNA alternative polyadenylation.

Authors:  Ryan Davis; Yongsheng Shi
Journal:  J Zhejiang Univ Sci B       Date:  2014-05       Impact factor: 3.066

Review 8.  Poly(A) RNA-binding proteins and polyadenosine RNA: new members and novel functions.

Authors:  Callie P Wigington; Kathryn R Williams; Michael P Meers; Gary J Bassell; Anita H Corbett
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-04-30       Impact factor: 9.957

9.  Molecular Mechanisms for CFIm-Mediated Regulation of mRNA Alternative Polyadenylation.

Authors:  Yong Zhu; Xiuye Wang; Elmira Forouzmand; Joshua Jeong; Feng Qiao; Gregory A Sowd; Alan N Engelman; Xiaohui Xie; Klemens J Hertel; Yongsheng Shi
Journal:  Mol Cell       Date:  2017-12-21       Impact factor: 17.970

Review 10.  Quick or quality? How mRNA escapes nuclear quality control during stress.

Authors:  Gesa Zander; Heike Krebber
Journal:  RNA Biol       Date:  2017-07-31       Impact factor: 4.652

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