Literature DB >> 24335801

Role of alternative polyadenylation in epigenetic silencing and antisilencing.

Liuyin Ma1, Cheng Guo, Qingshun Quinn Li.   

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Year:  2013        PMID： 24335801      PMCID： PMC3890878          DOI： 10.1073/pnas.1321025111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  21 in total

Review 1.  Alternative polyadenylation and gene expression regulation in plants.

Authors:  Denghui Xing; Qingshun Quinn Li
Journal:  Wiley Interdiscip Rev RNA       Date:  2010-11-09       Impact factor: 9.957

Review 2.  Give-and-take: interactions between DNA transposons and their host plant genomes.

Authors:  Hugo K Dooner; Clifford F Weil
Journal:  Curr Opin Genet Dev       Date:  2007-10-04       Impact factor: 5.578

3.  Epigenomic and RNA structural correlates of polyadenylation.

Authors:  Mugdha Khaladkar; Mark Smyda; Sridhar Hannenhalli
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

4.  Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

Authors:  Xiaohui Wu; Man Liu; Bruce Downie; Chun Liang; Guoli Ji; Qingshun Q Li; Arthur G Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-11       Impact factor: 11.205

Review 5.  Alternative polyadenylation: new insights from global analyses.

Authors:  Yongsheng Shi
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

6.  Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.

Authors:  Alan J Herr; Attila Molnàr; Alex Jones; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-28       Impact factor: 11.205

7.  Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Authors:  Hidetoshi Saze; Akiko Shiraishi; Asuka Miura; Tetsuji Kakutani
Journal:  Science       Date:  2008-01-25       Impact factor: 47.728

8.  Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns.

Authors:  Mingguang Lei; Honggui La; Kun Lu; Pengcheng Wang; Daisuke Miki; Zhizhong Ren; Cheng-Guo Duan; Xingang Wang; Kai Tang; Liang Zeng; Lan Yang; Heng Zhang; Wenfeng Nie; Pan Liu; Jianping Zhou; Renyi Liu; Yingli Zhong; Dong Liu; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

9.  Adenosine Methylation in Arabidopsis mRNA is Associated with the 3' End and Reduced Levels Cause Developmental Defects.

Authors:  Zsuzsanna Bodi; Silin Zhong; Surbhi Mehra; Jie Song; Neil Graham; Hongying Li; Sean May; Rupert George Fray
Journal:  Front Plant Sci       Date:  2012-03-23       Impact factor: 5.753

10.  A polyadenylation factor subunit implicated in regulating oxidative signaling in Arabidopsis thaliana.

Authors:  Jingxian Zhang; Balasubramanyam Addepalli; Kil-Young Yun; Arthur G Hunt; Ruqiang Xu; Suryadevara Rao; Qingshun Q Li; Deane L Falcone
Journal:  PLoS One       Date:  2008-06-11       Impact factor: 3.240
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  10 in total

1.  Transcriptome Analyses of FY Mutants Reveal Its Role in mRNA Alternative Polyadenylation.

Authors:  Zhibo Yu; Juncheng Lin; Qingshun Quinn Li
Journal:  Plant Cell       Date:  2019-08-19       Impact factor: 11.277

2.  The PHD-finger module of the Arabidopsis thaliana defense regulator EDM2 can recognize triply modified histone H3 peptides.

Authors:  Tokuji Tsuchiya; Thomas Eulgem
Journal:  Plant Signal Behav       Date:  2014

3.  Alternative polyadenylation coordinates embryonic development, sexual dimorphism and longitudinal growth in Xenopus tropicalis.

Authors:  Xiang Zhou; Yangzi Zhang; Jennifer J Michal; Lujiang Qu; Shuwen Zhang; Mark R Wildung; Weiwei Du; Derek J Pouchnik; Hui Zhao; Yin Xia; Honghua Shi; Guoli Ji; Jon F Davis; Gary D Smith; Michael D Griswold; Richard M Harland; Zhihua Jiang
Journal:  Cell Mol Life Sci       Date:  2019-02-07       Impact factor: 9.261

4.  A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis.

Authors:  Cheng-Guo Duan; Xingang Wang; Lingrui Zhang; Xiansong Xiong; Zhengjing Zhang; Kai Tang; Li Pan; Chuan-Chih Hsu; Huawei Xu; W Andy Tao; Heng Zhang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

5.  Noncanonical Alternative Polyadenylation Contributes to Gene Regulation in Response to Hypoxia.

Authors:  Laura de Lorenzo; Reed Sorenson; Julia Bailey-Serres; Arthur G Hunt
Journal:  Plant Cell       Date:  2017-05-30       Impact factor: 11.277

6.  A survey of transcriptome complexity using full-length isoform sequencing in the tea plant Camellia sinensis.

Authors:  Dongna Ma; Jingping Fang; Qiansu Ding; Liufeng Wei; Yiying Li; Liwen Zhang; Xingtan Zhang
Journal:  Mol Genet Genomics       Date:  2022-06-28       Impact factor: 2.980

7.  Integration of developmental and environmental signals via a polyadenylation factor in Arabidopsis.

Authors:  Man Liu; Ruqiang Xu; Carrie Merrill; Liwei Hong; Carol Von Lanken; Arthur G Hunt; Qingshun Q Li
Journal:  PLoS One       Date:  2014-12-29       Impact factor: 3.240

8.  Genome-wide determination of poly(A) sites in Medicago truncatula: evolutionary conservation of alternative poly(A) site choice.

Authors:  Xiaohui Wu; Bobby Gaffney; Arthur G Hunt; Qingshun Q Li
Journal:  BMC Genomics       Date:  2014-07-21       Impact factor: 3.969

9.  A Genome-wide Study of "Non-3UTR" Polyadenylation Sites in Arabidopsis thaliana.

Authors:  Cheng Guo; Matthew Spinelli; Man Liu; Qingshun Q Li; Chun Liang
Journal:  Sci Rep       Date:  2016-06-15       Impact factor: 4.379

10.  Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.

Authors:  Zhixin Zhao; Xiaohui Wu; Praveen Kumar Raj Kumar; Min Dong; Guoli Ji; Qingshun Quinn Li; Chun Liang
Journal:  G3 (Bethesda)       Date:  2014-03-13       Impact factor: 3.154
  10 in total

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