Literature DB >> 21956967

Alternative mRNA polyadenylation in eukaryotes: an effective regulator of gene expression.

Carol S Lutz1, Alexandra Moreira.   

Abstract

Alternative RNA processing mechanisms, including alternative splicing and alternative polyadenylation, are increasingly recognized as important regulators of gene expression. This article will focus on what has recently been described about alternative polyadenylation in development, differentiation, and disease in higher eukaryotes. We will also describe how the evolving global methodologies for examining the cellular transcriptome, both experimental and bioinformatic, are revealing new details about the complex nature of alternative 3(') end formation as well as interactions with other RNA-mediated and RNA processing mechanisms.
Copyright © 2010 John Wiley & Sons, Ltd.

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Year:  2010        PMID: 21956967     DOI: 10.1002/wrna.47

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  53 in total

1.  Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing.

Authors:  Kimberly A Dittmar; Peng Jiang; Juw Won Park; Karine Amirikian; Ji Wan; Shihao Shen; Yi Xing; Russell P Carstens
Journal:  Mol Cell Biol       Date:  2012-02-21       Impact factor: 4.272

Review 2.  The structure of human cleavage factor I(m) hints at functions beyond UGUA-specific RNA binding: a role in alternative polyadenylation and a potential link to 5' capping and splicing.

Authors:  Qin Yang; Gregory M Gilmartin; Sylvie Doublié
Journal:  RNA Biol       Date:  2011-09-01       Impact factor: 4.652

3.  RNA polymerase II kinetics in polo polyadenylation signal selection.

Authors:  Pedro A B Pinto; Telmo Henriques; Marta O Freitas; Torcato Martins; Rita G Domingues; Paulina S Wyrzykowska; Paula A Coelho; Alexandre M Carmo; Claudio E Sunkel; Nicholas J Proudfoot; Alexandra Moreira
Journal:  EMBO J       Date:  2011-05-20       Impact factor: 11.598

Review 4.  Implications of polyadenylation in health and disease.

Authors:  Ana Curinha; Sandra Oliveira Braz; Isabel Pereira-Castro; Andrea Cruz; Alexandra Moreira
Journal:  Nucleus       Date:  2014-10-31       Impact factor: 4.197

Review 5.  Alternative polyadenylation: new insights from global analyses.

Authors:  Yongsheng Shi
Journal:  RNA       Date:  2012-10-24       Impact factor: 4.942

6.  Novel upstream and downstream sequence elements contribute to polyadenylation efficiency.

Authors:  Sarah K Darmon; Carol S Lutz
Journal:  RNA Biol       Date:  2012-10-01       Impact factor: 4.652

7.  Promoter-Terminator Gene Loops Affect Alternative 3'-End Processing in Yeast.

Authors:  Mónica Lamas-Maceiras; Badri Nath Singh; Michael Hampsey; María A Freire-Picos
Journal:  J Biol Chem       Date:  2016-02-29       Impact factor: 5.157

8.  The export factor Yra1 modulates mRNA 3' end processing.

Authors:  Sara A Johnson; Hyunmin Kim; Benjamin Erickson; David L Bentley
Journal:  Nat Struct Mol Biol       Date:  2011-09-25       Impact factor: 15.369

9.  An efficient algorithm for accurate computation of the Dirichlet-multinomial log-likelihood function.

Authors:  Peng Yu; Chad A Shaw
Journal:  Bioinformatics       Date:  2014-02-11       Impact factor: 6.937

Review 10.  The fate of the messenger is pre-determined: a new model for regulation of gene expression.

Authors:  Gal Haimovich; Mordechai Choder; Robert H Singer; Tatjana Trcek
Journal:  Biochim Biophys Acta       Date:  2013-01-19
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