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Literature DB >> 23045501

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Steven D Brown¹, Sagar M Utturkar, Dawn M Klingeman, Courtney M Johnson, Stanton L Martin, Miriam L Land, Tse-Yuan S Lu, Christopher W Schadt, Mitchel J Doktycz, Dale A Pelletier.

Abstract

To aid in the investigation of the Populus deltoides microbiome, we generated draft genome sequences for 21 Pseudomonas strains and 19 other diverse bacteria isolated from Populus deltoides roots. Genome sequences for isolates similar to Acidovorax, Bradyrhizobium, Brevibacillus, Caulobacter, Chryseobacterium, Flavobacterium, Herbaspirillum, Novosphingobium, Pantoea, Phyllobacterium, Polaromonas, Rhizobium, Sphingobium, and Variovorax were generated.

Entities: Species

Mesh：

Substances：
DNA, Bacterial

Year: 2012 PMID： 23045501 PMCID： PMC3486089 DOI： 10.1128/JB.01243-12

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

25 in total

1. Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from zinc-lead mine tailings.

Authors: Xiuli Hao; Yanbing Lin; Laurel Johnstone; David A Baltrus; Susan J Miller; Gehong Wei; Christopher Rensing
Journal: J Bacteriol Date: 2012-02 Impact factor: 3.490

2. Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Authors: Steven D Brown; Dawn M Klingeman; Tse-Yuan S Lu; Courtney M Johnson; Sagar M Utturkar; Miriam L Land; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal: J Bacteriol Date: 2012-05 Impact factor: 3.490

3. Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.

Authors: Miguel Redondo-Nieto; Matthieu Barret; John P Morrisey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Stephen R Giddens; Eric R Coppoolse; Candela Muriel; Willem J Stiekema; Paul B Rainey; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal: J Bacteriol Date: 2012-03 Impact factor: 3.490

4. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.

Authors: David J Weston; Dale A Pelletier; Jennifer L Morrell-Falvey; Timothy J Tschaplinski; Sara S Jawdy; Tse-Yuan Lu; Sara M Allen; Sarah J Melton; Madhavi Z Martin; Christopher W Schadt; Abhijit A Karve; Jin-Gui Chen; Xiaohan Yang; Mitchel J Doktycz; Gerald A Tuskan
Journal: Mol Plant Microbe Interact Date: 2012-06 Impact factor: 4.171

5. Genome sequence of Streptomyces sp. strain TOR3209, a rhizosphere microecology regulator isolated from tomato rhizosphere.

Authors: Dong Hu; Xiaozhi Li; Yueli Chang; Huan He; Cuimian Zhang; Nan Jia; Hongtao Li; Zhanwu Wang
Journal: J Bacteriol Date: 2012-03 Impact factor: 3.490

6. The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis.

Authors: Kun Hao; Pengfei He; Jochen Blom; Christian Rueckert; Zichao Mao; Yixin Wu; Yueqiu He; Rainer Borriss
Journal: J Bacteriol Date: 2012-06 Impact factor: 3.490

7. Draft genome sequences of the biocontrol bacterium Mitsuaria sp. strain H24L5A.

Authors: Xiaoqing Rong; Fulya Baysal Gurel; Tea Meulia; Brian B McSpadden Gardener
Journal: J Bacteriol Date: 2012-02 Impact factor: 3.490

8. Draft genome sequences of the Pseudomonas fluorescens biocontrol strains Wayne1R and Wood1R.

Authors: Xiaoqing Rong; Fulya Baysal Gurel; Tea Meulia; Brian B McSpadden Gardener
Journal: J Bacteriol Date: 2012-02 Impact factor: 3.490

9. Genome sequence of Stenotrophomonas maltophilia RR-10, isolated as an endophyte from rice root.

Authors: Bo Zhu; He Liu; Wen-Xiao Tian; Xiao-Ying Fan; Bin Li; Xue-Ping Zhou; Gu-Lei Jin; Guan-Lin Xie
Journal: J Bacteriol Date: 2012-03 Impact factor: 3.490

10. IMG: the Integrated Microbial Genomes database and comparative analysis system.

Authors: Victor M Markowitz; I-Min A Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Biju Jacob; Jinghua Huang; Peter Williams; Marcel Huntemann; Iain Anderson; Konstantinos Mavromatis; Natalia N Ivanova; Nikos C Kyrpides
Journal: Nucleic Acids Res Date: 2012-01 Impact factor: 16.971

59 in total

1. Microstencils to generate defined, multi-species patterns of bacteria.

Authors: Collin M Timm; Ryan R Hansen; Mitchel J Doktycz; Scott T Retterer; Dale A Pelletier
Journal: Biomicrofluidics Date: 2015-11-12 Impact factor: 2.800

2. Overexpression and activities of 1-Cys peroxiredoxin from Pseudomonas fluorescens GcM5-1A carried by pine wood nematode.

Authors: Guohua Liu; Kai Feng; Daosen Guo; Ronggui Li
Journal: Folia Microbiol (Praha) Date: 2015-02-27 Impact factor: 2.099

3. Diversity and heritability of the maize rhizosphere microbiome under field conditions.

Authors: Jason A Peiffer; Aymé Spor; Omry Koren; Zhao Jin; Susannah Green Tringe; Jeffery L Dangl; Edward S Buckler; Ruth E Ley
Journal: Proc Natl Acad Sci U S A Date: 2013-04-01 Impact factor: 11.205

4. Whole-genome sequence of Chryseobacterium oranimense, a colistin-resistant bacterium isolated from a cystic fibrosis patient in France.

Authors: Poonam Sharma; Sushim Kumar Gupta; Seydina M Diene; Jean-Marc Rolain
Journal: Antimicrob Agents Chemother Date: 2015-01-12 Impact factor: 5.191