Literature DB >> 22247533

Draft genome sequence of plant growth-promoting rhizobium Mesorhizobium amorphae, isolated from zinc-lead mine tailings.

Xiuli Hao1, Yanbing Lin, Laurel Johnstone, David A Baltrus, Susan J Miller, Gehong Wei, Christopher Rensing.   

Abstract

Here, we describe the draft genome sequence of Mesorhizobium amorphae strain CCNWGS0123, isolated from nodules of Robinia pseudoacacia growing on zinc-lead mine tailings. A large number of metal(loid) resistance genes, as well as genes reported to promote plant growth, were identified, presenting a great future potential for aiding phytoremediation in metal(loid)-contaminated soil.

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Year:  2012        PMID： 22247533      PMCID： PMC3264094          DOI： 10.1128/JB.06475-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

Review 1.  Rhizobium type III secretion systems: legume charmers or alarmers?

Authors:  C Marie; W J Broughton; W J Deakin
Journal:  Curr Opin Plant Biol       Date:  2001-08       Impact factor: 7.834

Review 2.  Plant growth promoting rhizobacteria and endophytes accelerate phytoremediation of metalliferous soils.

Authors:  Y Ma; M N V Prasad; M Rajkumar; H Freitas
Journal:  Biotechnol Adv       Date:  2010-12-13       Impact factor: 14.227

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences.

Authors:  Patrik J Hoegger; Sreedhar Kilaru; Timothy Y James; Jason R Thacker; Ursula Kües
Journal:  FEBS J       Date:  2006-05       Impact factor: 5.542

5.  Characterization of Nops, nodulation outer proteins, secreted via the type III secretion system of NGR234.

Authors:  Corinne Marie; William J Deakin; Virginie Viprey; Joanna Kopciñska; Wladyslaw Golinowski; Hari B Krishnan; Xavier Perret; William J Broughton
Journal:  Mol Plant Microbe Interact       Date:  2003-09       Impact factor: 4.171

6.  Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti.

Authors:  T Kaneko; Y Nakamura; S Sato; E Asamizu; T Kato; S Sasamoto; A Watanabe; K Idesawa; A Ishikawa; K Kawashima; T Kimura; Y Kishida; C Kiyokawa; M Kohara; M Matsumoto; A Matsuno; Y Mochizuki; S Nakayama; N Nakazaki; S Shimpo; M Sugimoto; C Takeuchi; M Yamada; S Tabata
Journal:  DNA Res       Date:  2000-12-31       Impact factor: 4.458

7.  Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.

Authors:  Sue A Roberts; Andrzej Weichsel; Gregor Grass; Keshari Thakali; James T Hazzard; Gordon Tollin; Christopher Rensing; William R Montfort
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

8.  Metal biosorption capability of Cupriavidus taiwanensis and its effects on heavy metal removal by nodulated Mimosa pudica.

Authors:  Wen-Ming Chen; Chih-Hui Wu; Euan K James; Jo-Shu Chang
Journal:  J Hazard Mater       Date:  2007-06-02       Impact factor: 10.588

9.  Invasive Robinia pseudoacacia in China is nodulated by Mesorhizobium and Sinorhizobium species that share similar nodulation genes with native American symbionts.

Authors:  Gehong Wei; Weimin Chen; Wenfei Zhu; Chun Chen; J Peter W Young; Cyril Bontemps
Journal:  FEMS Microbiol Ecol       Date:  2009-04-06       Impact factor: 4.194

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  11 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Functional and expression analysis of the metal-inducible dmeRF system from Rhizobium leguminosarum bv. viciae.

Authors:  L Rubio-Sanz; R I Prieto; J Imperial; J M Palacios; B Brito
Journal:  Appl Environ Microbiol       Date:  2013-08-09       Impact factor: 4.792

3.  Comparative analysis of amino acid sequences from mesophiles and thermophiles in respective of carbon-nitrogen hydrolase family.

Authors:  Sarita Devi; Nikhil Sharma; Tek Chand Bhalla
Journal:  3 Biotech       Date:  2013-01-16       Impact factor: 2.406

Review 4.  Rhizobia and their bio-partners as novel drivers for functional remediation in contaminated soils.

Authors:  Ying Teng; Xiaomi Wang; Lina Li; Zhengao Li; Yongming Luo
Journal:  Front Plant Sci       Date:  2015-02-05       Impact factor: 5.753

5.  Whole-Genome Sequence of Mesorhizobium hungaricum sp. nov. Strain UASWS1009, a Potential Resource for Agricultural and Environmental Uses.

Authors:  Julien Crovadore; Bastien Cochard; Gautier Calmin; Romain Chablais; Torsten Schulz; François Lefort
Journal:  Genome Announc       Date:  2016-10-13

6.  Comparative genomics of Paraburkholderia kururiensis and its potential in bioremediation, biofertilization, and biocontrol of plant pathogens.

Authors:  Graciela M Dias; Araceli de Sousa Pires; Vinicius S Grilo; Michele R Castro; Leonardo de Figueiredo Vilela; Bianca C Neves
Journal:  Microbiologyopen       Date:  2019-02-27       Impact factor: 3.139

7.  Profiling of differentially expressed genes in roots of Robinia pseudoacacia during nodule development using suppressive subtractive hybridization.

Authors:  Hongyan Chen; Minxia Chou; Xinye Wang; Sisi Liu; Feilong Zhang; Gehong Wei
Journal:  PLoS One       Date:  2013-06-11       Impact factor: 3.240

8.  The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Authors:  Jin Duan; Wei Jiang; Zhenyu Cheng; John J Heikkila; Bernard R Glick
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

9.  A Combination of Biochar-Mineral Complexes and Compost Improves Soil Bacterial Processes, Soil Quality, and Plant Properties.

Authors:  Jun Ye; Rui Zhang; Shaun Nielsen; Stephen D Joseph; Danfeng Huang; Torsten Thomas
Journal:  Front Microbiol       Date:  2016-04-08       Impact factor: 5.640

10.  Complete genome sequence of the Robinia pseudoacacia L. symbiont Mesorhizobium amorphae CCNWGS0123.

Authors:  Xinye Wang; Yantao Luo; Dongying Liu; Jiamei Wang; Shi Wei; Liang Zhao
Journal:  Stand Genomic Sci       Date:  2018-09-18
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