Literature DB >> 22328765

Genome sequence of the biocontrol strain Pseudomonas fluorescens F113.

Miguel Redondo-Nieto1, Matthieu Barret, John P Morrisey, Kieran Germaine, Francisco Martínez-Granero, Emma Barahona, Ana Navazo, María Sánchez-Contreras, Jennifer A Moynihan, Stephen R Giddens, Eric R Coppoolse, Candela Muriel, Willem J Stiekema, Paul B Rainey, David Dowling, Fergal O'Gara, Marta Martín, Rafael Rivilla.   

Abstract

Pseudomonas fluorescens F113 is a plant growth-promoting rhizobacterium (PGPR) that has biocontrol activity against fungal plant pathogens and is a model for rhizosphere colonization. Here, we present its complete genome sequence, which shows that besides a core genome very similar to those of other strains sequenced within this species, F113 possesses a wide array of genes encoding specialized functions for thriving in the rhizosphere and interacting with eukaryotic organisms.

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Year:  2012        PMID： 22328765      PMCID： PMC3294817          DOI： 10.1128/JB.06601-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  21 in total

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Authors:  P Shanahan; D J O'sullivan; P Simpson; J D Glennon; F O'gara
Journal:  Appl Environ Microbiol       Date:  1992-01       Impact factor: 4.792

2.  Efficient rhizosphere colonization by Pseudomonas fluorescens f113 mutants unable to form biofilms on abiotic surfaces.

Authors:  Emma Barahona; Ana Navazo; Fátima Yousef-Coronado; Daniel Aguirre de Cárcer; Francisco Martínez-Granero; Manuel Espinosa-Urgel; Marta Martín; Rafael Rivilla
Journal:  Environ Microbiol       Date:  2010-12       Impact factor: 5.491

3.  A regulatory RNA (PrrB RNA) modulates expression of secondary metabolite genes in Pseudomonas fluorescens F113.

Authors:  S Aarons; A Abbas; C Adams; A Fenton; F O'Gara
Journal:  J Bacteriol       Date:  2000-07       Impact factor: 3.490

4.  Construction of a rhizosphere pseudomonad with potential to degrade polychlorinated biphenyls and detection of bph gene expression in the rhizosphere.

Authors:  G M Brazil; L Kenefick; M Callanan; A Haro; V de Lorenzo; D N Dowling; F O'Gara
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

5.  Role of 2,4-Diacetylphloroglucinol in the Interactions of the Biocontrol Pseudomonad Strain F113 with the Potato Cyst Nematode Globodera rostochiensis.

Authors:  D Cronin; Y Moenne-Loccoz; A Fenton; C Dunne; D N Dowling; F O'gara
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

6.  Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy.

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7.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

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Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

8.  Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Authors:  Ian T Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T DeBoy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Stephen A Sullivan; Mary J Rosovitz; Michelle L Gwinn; Liwei Zhou; Davd J Schneider; Samuel W Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Journal:  Nat Biotechnol       Date:  2005-06-26       Impact factor: 54.908

9.  Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

Authors:  Mark W Silby; Ana M Cerdeño-Tárraga; Georgios S Vernikos; Stephen R Giddens; Robert W Jackson; Gail M Preston; Xue-Xian Zhang; Christina D Moon; Stefanie M Gehrig; Scott A C Godfrey; Christopher G Knight; Jacob G Malone; Zena Robinson; Andrew J Spiers; Simon Harris; Gregory L Challis; Alice M Yaxley; David Harris; Kathy Seeger; Lee Murphy; Simon Rutter; Rob Squares; Michael A Quail; Elizabeth Saunders; Konstantinos Mavromatis; Thomas S Brettin; Stephen D Bentley; Joanne Hothersall; Elton Stephens; Christopher M Thomas; Julian Parkhill; Stuart B Levy; Paul B Rainey; Nicholas R Thomson
Journal:  Genome Biol       Date:  2009-05-11       Impact factor: 13.583

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  30 in total

1.  The genome of Pseudomonas fluorescens strain R124 demonstrates phenotypic adaptation to the mineral environment.

Authors:  Michael D Barton; Michael Petronio; Juan G Giarrizzo; Bethany V Bowling; Hazel A Barton
Journal:  J Bacteriol       Date:  2013-08-30       Impact factor: 3.490

2.  Type III secretion system and virulence markers highlight similarities and differences between human- and plant-associated pseudomonads related to Pseudomonas fluorescens and P. putida.

Authors:  Sylvie Mazurier; Annabelle Merieau; Dorian Bergeau; Victorien Decoin; Daniel Sperandio; Alexandre Crépin; Corinne Barbey; Katy Jeannot; Maïté Vicré-Gibouin; Patrick Plésiat; Philippe Lemanceau; Xavier Latour
Journal:  Appl Environ Microbiol       Date:  2015-01-30       Impact factor: 4.792

3.  From biocontrol to cancer, probiotics and beyond.

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Journal:  Bioengineered       Date:  2012-12-17       Impact factor: 3.269

4.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

5.  Degradation of Benzene by Pseudomonas veronii 1YdBTEX2 and 1YB2 Is Catalyzed by Enzymes Encoded in Distinct Catabolism Gene Clusters.

Authors:  Daiana de Lima-Morales; Diego Chaves-Moreno; Melissa L Wos-Oxley; Ruy Jáuregui; Ramiro Vilchez-Vargas; Dietmar H Pieper
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Review 6.  Microbiology, genomics, and clinical significance of the Pseudomonas fluorescens species complex, an unappreciated colonizer of humans.

Authors:  Brittan S Scales; Robert P Dickson; John J LiPuma; Gary B Huffnagle
Journal:  Clin Microbiol Rev       Date:  2014-10       Impact factor: 26.132

7.  Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making.

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Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

8.  Exploration of Social Spreading Reveals That This Behavior Is Prevalent among Pedobacter and Pseudomonas fluorescens Isolates and That There Are Variations in the Induction of the Phenotype.

Authors:  Lucy M McCully; Jasmine Graslie; Alana R McGraw; Adam S Bitzer; Auður M Sigurbjörnsdóttir; Oddur Vilhelmsson; Mark W Silby
Journal:  Appl Environ Microbiol       Date:  2021-07-21       Impact factor: 4.792

9.  The complete genome sequence of the plant growth-promoting bacterium Pseudomonas sp. UW4.

Authors:  Jin Duan; Wei Jiang; Zhenyu Cheng; John J Heikkila; Bernard R Glick
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

10.  Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.

Authors:  Miguel Redondo-Nieto; Matthieu Barret; John Morrissey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Candela Muriel; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal:  BMC Genomics       Date:  2013-01-25       Impact factor: 3.969
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