Literature DB >> 22247526

Draft genome sequences of the Pseudomonas fluorescens biocontrol strains Wayne1R and Wood1R.

Xiaoqing Rong1, Fulya Baysal Gurel, Tea Meulia, Brian B McSpadden Gardener.   

Abstract

Pseudomonas fluorescens strains Wayne1R and Wood1R have proven capacities to improve plant health. Here we report the draft genome sequences and automatic annotations of both strains. Genome comparisons reveal similarities with P. fluorescens strain Pf-5, reveal the novelty of Wood1R, and indicate some genes that may be related to biocontrol.

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Year:  2012        PMID： 22247526      PMCID： PMC3264083          DOI： 10.1128/JB.06338-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

Review 1.  Microbial populations responsible for specific soil suppressiveness to plant pathogens.

Authors:  David M Weller; Jos M Raaijmakers; Brian B McSpadden Gardener; Linda S Thomashow
Journal:  Annu Rev Phytopathol       Date:  2002-05-13       Impact factor: 13.078

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Identification and characterization of a gene cluster for synthesis of the polyketide antibiotic 2,4-diacetylphloroglucinol from Pseudomonas fluorescens Q2-87.

Authors:  M G Bangera; L S Thomashow
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

4.  Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.

Authors:  Daniel R Zerbino; Gayle K McEwen; Elliott H Margulies; Ewan Birney
Journal:  PLoS One       Date:  2009-12-22       Impact factor: 3.240

5.  Seed treatment with 2,4-diacetylphloroglucinol-producing pseudomonads improves crop health in low-pH soils by altering patterns of nutrient uptake.

Authors:  Rosa E Raudales; Erica Stone; Brian B McSpadden Gardener
Journal:  Phytopathology       Date:  2009-05       Impact factor: 4.025

6.  Distribution and Biocontrol Potential of phlD(+) Pseudomonads in Corn and Soybean Fields.

Authors:  Brian B McSpadden Gardener; Laura J Gutierrez; Raghavendra Joshi; Richard Edema; Elizabeth Lutton
Journal:  Phytopathology       Date:  2005-06       Impact factor: 4.025

7.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

8.  Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.

Authors:  Ian T Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T DeBoy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Stephen A Sullivan; Mary J Rosovitz; Michelle L Gwinn; Liwei Zhou; Davd J Schneider; Samuel W Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Journal:  Nat Biotechnol       Date:  2005-06-26       Impact factor: 54.908

9.  Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens.

Authors:  Mark W Silby; Ana M Cerdeño-Tárraga; Georgios S Vernikos; Stephen R Giddens; Robert W Jackson; Gail M Preston; Xue-Xian Zhang; Christina D Moon; Stefanie M Gehrig; Scott A C Godfrey; Christopher G Knight; Jacob G Malone; Zena Robinson; Andrew J Spiers; Simon Harris; Gregory L Challis; Alice M Yaxley; David Harris; Kathy Seeger; Lee Murphy; Simon Rutter; Rob Squares; Michael A Quail; Elizabeth Saunders; Konstantinos Mavromatis; Thomas S Brettin; Stephen D Bentley; Joanne Hothersall; Elton Stephens; Christopher M Thomas; Julian Parkhill; Stuart B Levy; Paul B Rainey; Nicholas R Thomson
Journal:  Genome Biol       Date:  2009-05-11       Impact factor: 13.583

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  4 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

2.  Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction.

Authors:  Miguel Redondo-Nieto; Matthieu Barret; John Morrissey; Kieran Germaine; Francisco Martínez-Granero; Emma Barahona; Ana Navazo; María Sánchez-Contreras; Jennifer A Moynihan; Candela Muriel; David Dowling; Fergal O'Gara; Marta Martín; Rafael Rivilla
Journal:  BMC Genomics       Date:  2013-01-25       Impact factor: 3.969

3.  Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Authors:  Joyce E Loper; Karl A Hassan; Dmitri V Mavrodi; Edward W Davis; Chee Kent Lim; Brenda T Shaffer; Liam D H Elbourne; Virginia O Stockwell; Sierra L Hartney; Katy Breakwell; Marcella D Henkels; Sasha G Tetu; Lorena I Rangel; Teresa A Kidarsa; Neil L Wilson; Judith E van de Mortel; Chunxu Song; Rachel Blumhagen; Diana Radune; Jessica B Hostetler; Lauren M Brinkac; A Scott Durkin; Daniel A Kluepfel; W Patrick Wechter; Anne J Anderson; Young Cheol Kim; Leland S Pierson; Elizabeth A Pierson; Steven E Lindow; Donald Y Kobayashi; Jos M Raaijmakers; David M Weller; Linda S Thomashow; Andrew E Allen; Ian T Paulsen
Journal:  PLoS Genet       Date:  2012-07-05       Impact factor: 5.917

4.  Biosynthesis, Chemical Structure, and Structure-Activity Relationship of Orfamide Lipopeptides Produced by Pseudomonas protegens and Related Species.

Authors:  Zongwang Ma; Niels Geudens; Nam P Kieu; Davy Sinnaeve; Marc Ongena; José C Martins; Monica Höfte
Journal:  Front Microbiol       Date:  2016-03-30       Impact factor: 5.640
  4 in total

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