Literature DB >> 22247532

Draft genome sequences of the biocontrol bacterium Mitsuaria sp. strain H24L5A.

Xiaoqing Rong1, Fulya Baysal Gurel, Tea Meulia, Brian B McSpadden Gardener.   

Abstract

Mitsuaria sp. strain H24L5A is a plant-associated bacterium with proven capacities to suppress plant pathogens. Here, we report the draft genome sequences and automatic annotation of H24L5A. Comparative genomic analysis indicates H24L5A's similarity to the Leptothrix and Methylibium species, as well as several genes potentially contributing to its biocontrol activities.

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Year:  2012        PMID： 22247532      PMCID： PMC3264084          DOI： 10.1128/JB.06537-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Chitin signaling in plants: insights into the perception of fungal pathogens and rhizobacterial symbionts.

Authors:  Nancy A Eckardt
Journal:  Plant Cell       Date:  2008-02       Impact factor: 11.277

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  Field management effects on damping-off and early season vigor of crops in a transitional organic cropping system.

Authors:  Fulya Baysal; Maria-Soledad Benitez; Matthew D Kleinhenz; Sally A Miller; Brian B McSpadden Gardener
Journal:  Phytopathology       Date:  2008-05       Impact factor: 4.025

4.  Mitsuaria chitosanitabida gen. nov., sp. nov., an aerobic, chitosanase-producing member of the 'Betaproteobacteria'.

Authors:  Daiki Amakata; Yasuhiro Matsuo; Kumiko Shimono; Jae Kweon Park; Choong Soo Yun; Hideyuki Matsuda; Akira Yokota; Makoto Kawamukai
Journal:  Int J Syst Evol Microbiol       Date:  2005-09       Impact factor: 2.747

5.  Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.

Authors:  Daniel R Zerbino; Gayle K McEwen; Elliott H Margulies; Ewan Birney
Journal:  PLoS One       Date:  2009-12-22       Impact factor: 3.240

6.  Linking sequence to function in soil bacteria: sequence-directed isolation of novel bacteria contributing to soilborne plant disease suppression.

Authors:  María-Soledad Benítez; Brian B McSpadden Gardener
Journal:  Appl Environ Microbiol       Date:  2008-12-16       Impact factor: 4.792

7.  The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors:  Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal:  Nucleic Acids Res       Date:  2005-10-07       Impact factor: 16.971

8.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  8 in total
  1 in total

1.  Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Authors:  Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490
  1 in total

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