Literature DB >> 23039592

Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Guangjin Hou1, In-Ja L Byeon, Jinwoo Ahn, Angela M Gronenborn, Tatyana Polenova.   

Abstract

(13)C and (15)N chemical shift (CS) interaction is a sensitive probe of structure and dynamics in a wide variety of biological and inorganic systems, and in the recent years several magic angle spinning NMR approaches have emerged for residue-specific measurements of chemical shift anisotropy (CSA) tensors in uniformly and sparsely enriched proteins. All of the currently existing methods are applicable to slow and moderate magic angle spinning (MAS) regime, i.e., MAS frequencies below 20 kHz. With the advent of fast and ultrafast MAS probes capable of spinning frequencies of 40-100 kHz, and with the superior resolution and sensitivity attained at such high frequencies, development of CSA recoupling techniques working under such conditions is necessary. In this work, we present a family of R-symmetry based pulse sequences for recoupling of (13)C∕(15)N CSA interactions that work well in both natural abundance and isotopically enriched systems. We demonstrate that efficient recoupling of either first-rank (σ(1)) or second-rank (σ(2)) spatial components of CSA interaction is attained with appropriately chosen γ-encoded RN(n)(v) symmetry sequences. The advantage of these γ-encoded RN(n)(v)-symmetry based CSA (RNCSA) recoupling schemes is that they are suitable for CSA recoupling under a wide range of MAS frequencies, including fast MAS regime. Comprehensive analysis of the recoupling properties of these RN(n)(v) symmetry sequences reveals that the σ(1)-CSA recoupling symmetry sequences exhibit large scaling factors; however, the partial homonuclear dipolar Hamiltonian components are symmetry allowed, which makes this family of sequences suitable for CSA measurements in systems with weak homonuclear dipolar interactions. On the other hand, the γ-encoded symmetry sequences for σ(2)-CSA recoupling have smaller scaling factors but they efficiently suppress the homonuclear dipole-dipole interactions. Therefore, the latter family of sequences is applicable for measurements of CSA parameters in systems with strong homonuclear dipolar couplings, such as uniformly-(13)C labeled biological solids. We demonstrate RNCSA NMR experiments and numerical simulations establishing the utility of this approach to the measurements of (13)C and (15)N CSA parameters in model compounds, [(15)N]-N-acetyl-valine (NAV), [U-(13)C, (15)N]-alanine, [U-(13)C,(15)N]-histidine, and present the application of this approach to [U-(13)C∕(15)N]-Tyr labeled C-terminal domain of HIV-1 CA protein.

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Year:  2012        PMID: 23039592      PMCID: PMC3477183          DOI: 10.1063/1.4754149

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  33 in total

1.  Correlation of fast and slow chemical shift spinning sideband patterns under fast magic-angle spinning.

Authors:  Bénédicte Eléna; Sabine Hediger; Lyndon Emsley
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

2.  The HIV-1 capsid protein C-terminal domain in complex with a virus assembly inhibitor.

Authors:  François Ternois; Jana Sticht; Stéphane Duquerroy; Hans-Georg Kräusslich; Félix A Rey
Journal:  Nat Struct Mol Biol       Date:  2005-07-24       Impact factor: 15.369

3.  Development of modulated rf sequences for decoupling and recoupling of nuclear-spin interactions in sample-spinning solid-state NMR: application to chemical-shift anisotropy determination.

Authors:  Yusuke Nishiyama; Toshio Yamazaki; Takehiko Terao
Journal:  J Chem Phys       Date:  2006-02-14       Impact factor: 3.488

Review 4.  The use of chemical shifts and their anisotropies in biomolecular structure determination.

Authors:  D A Case
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

5.  The interdomain linker region of HIV-1 capsid protein is a critical determinant of proper core assembly and stability.

Authors:  Jiyang Jiang; Sherimay D Ablan; Suchitra Derebail; Kamil Hercík; Ferri Soheilian; James A Thomas; Shixing Tang; Indira Hewlett; Kunio Nagashima; Robert J Gorelick; Eric O Freed; Judith G Levin
Journal:  Virology       Date:  2011-10-26       Impact factor: 3.616

6.  Determination of relative tensor orientations by γ-encoded chemical shift anisotropy/heteronuclear dipolar coupling 3D NMR spectroscopy in biological solids.

Authors:  Guangjin Hou; Sivakumar Paramasivam; In-Ja L Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  Phys Chem Chem Phys       Date:  2010-10-08       Impact factor: 3.676

7.  A robust technique for two-dimensional separation of undistorted chemical-shift anisotropy powder patterns in magic-angle-spinning NMR.

Authors:  S-F Liu; J-D Mao; K Schmidt-Rohr
Journal:  J Magn Reson       Date:  2002-03       Impact factor: 2.229

8.  Solid-state NMR studies of HIV-1 capsid protein assemblies.

Authors:  Yun Han; Jinwoo Ahn; Jason Concel; In-Ja L Byeon; Angela M Gronenborn; Jun Yang; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

9.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

10.  Secondary and tertiary structural effects on protein NMR chemical shifts: an ab initio approach.

Authors:  A C de Dios; J G Pearson; E Oldfield
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

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  31 in total

1.  Asynchronous through-bond homonuclear isotropic mixing: application to carbon-carbon transfer in perdeuterated proteins under MAS.

Authors:  Natalia Kulminskaya; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2015-08-30       Impact factor: 2.835

2.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Authors:  Dwaipayan Mukhopadhyay; Chitrak Gupta; Theint Theint; Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2018-10-30       Impact factor: 2.229

3.  Expanding the horizons for structural analysis of fully protonated protein assemblies by NMR spectroscopy at MAS frequencies above 100 kHz.

Authors:  Jochem Struppe; Caitlin M Quinn; Manman Lu; Mingzhang Wang; Guangjin Hou; Xingyu Lu; Jodi Kraus; Loren B Andreas; Jan Stanek; Daniela Lalli; Anne Lesage; Guido Pintacuda; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  Solid State Nucl Magn Reson       Date:  2017-07-03       Impact factor: 2.293

Review 4.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

5.  Accurate Backbone 13 C and 15 N Chemical Shift Tensors in Galectin-3 Determined by MAS NMR and QM/MM: Details of Structure and Environment Matter.

Authors:  Jodi Kraus; Rupal Gupta; Manman Lu; Angela M Gronenborn; Mikael Akke; Tatyana Polenova
Journal:  Chemphyschem       Date:  2020-06-04       Impact factor: 3.102

6.  Proton chemical shift tensors determined by 3D ultrafast MAS double-quantum NMR spectroscopy.

Authors:  Rongchun Zhang; Kamal H Mroue; Ayyalusamy Ramamoorthy
Journal:  J Chem Phys       Date:  2015-10-14       Impact factor: 3.488

7.  Composite-180° pulse-based symmetry sequences to recouple proton chemical shift anisotropy tensors under ultrafast MAS solid-state NMR spectroscopy.

Authors:  Manoj Kumar Pandey; Michal Malon; Ayyalusamy Ramamoorthy; Yusuke Nishiyama
Journal:  J Magn Reson       Date:  2014-11-18       Impact factor: 2.229

Review 8.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

9.  A Magic-Angle Spinning NMR Method for the Site-Specific Measurement of Proton Chemical-Shift Anisotropy in Biological and Organic Solids.

Authors:  Guangjin Hou; Rupal Gupta; Tatyana Polenova; Alexander J Vega
Journal:  Isr J Chem       Date:  2014-02-01       Impact factor: 3.333

10.  Rapid automated determination of chemical shift anisotropy values in the carbonyl and carboxyl groups of fd-y21m bacteriophage using solid state NMR.

Authors:  Tom Aharoni; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2018-08-23       Impact factor: 2.835

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