Literature DB >> 30396157

Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Dwaipayan Mukhopadhyay1, Chitrak Gupta1, Theint Theint1, Christopher P Jaroniec2.   

Abstract

Multidimensional magic-angle spinning solid-state NMR experiments are described that permit cis and trans peptide bonds in uniformly 13C,15N-labeled peptides and proteins to be unambiguously distinguished in residue-specific manner by determining the relative orientations of the amide 13C' CSA and 1H-15N dipolar coupling tensors. The experiments are demonstrated for model peptides glycylglycine and 2,5-diketopiperazine containing trans and cis peptide bonds, respectively. Subsequently, the measurements are extended to two representative proteins that contain exclusively trans peptide bonds, microcrystalline B3 immunoglobulin domain of protein G and Y145Stop human prion protein amyloid fibrils, to illustrate their applicability to a wide range of protein systems.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Magic-angle spinning solid-state NMR; Peptide bond conformation; Protein structure; Tensor correlation

Mesh:

Substances:

Year:  2018        PMID: 30396157      PMCID: PMC6289736          DOI: 10.1016/j.jmr.2018.10.015

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  60 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Site-specific variations of carbonyl chemical shift anisotropies in proteins.

Authors:  Phineus R L Markwick; Michael Sattler
Journal:  J Am Chem Soc       Date:  2004-09-22       Impact factor: 15.419

3.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
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4.  Symmetry in the design of NMR multiple-pulse sequences.

Authors:  Malcolm H Levitt
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

5.  Determination of the peptide torsion angle phi by 15N chemical shift and 13Calpha-1Halpha dipolar tensor correlation in solid-state MAS NMR.

Authors:  M Hong; J D Gross; W Hu; R G Griffin
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

Review 6.  The structure of fibrils from 'misfolded' proteins.

Authors:  Beat H Meier; Anja Böckmann
Journal:  Curr Opin Struct Biol       Date:  2014-12-24       Impact factor: 6.809

7.  NMR determination of the torsion angle psi in alpha-helical peptides and proteins: the HCCN dipolar correlation experiment.

Authors:  Vladimir Ladizhansky; Mikhail Veshtort; Robert G Griffin
Journal:  J Magn Reson       Date:  2002-02       Impact factor: 2.229

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 9.  Solid-state NMR studies of amyloid fibril structure.

Authors:  Robert Tycko
Journal:  Annu Rev Phys Chem       Date:  2011       Impact factor: 12.703

10.  Structural studies of proteins by paramagnetic solid-state NMR spectroscopy.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

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  2 in total

Review 1.  Dihedral Angle Measurements for Structure Determination by Biomolecular Solid-State NMR Spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Front Mol Biosci       Date:  2021-12-06

2.  Scaled recoupling of chemical shift anisotropies at high magnetic fields under MAS with interspersed C-elements.

Authors:  Keith J Fritzsching; Eric G Keeler; Chengming He; Ann E McDermott
Journal:  J Chem Phys       Date:  2020-09-14       Impact factor: 4.304

  2 in total

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