Literature DB >> 9818268

The use of chemical shifts and their anisotropies in biomolecular structure determination.

D A Case1.   

Abstract

The existence of chemical shift dispersion is crucial for the application of NMR spectroscopy to biomolecules, but the direct interpretation of shift tensors in terms of structure and dynamics is often difficult. Proton shifts reflect environmental influences from nearby aromatic groups, metal sites or hydrogen-bonding partners. These effects can be reasonably modeled with empirical equations, but multiple contributions to shifts can be difficult to disentangle. Shifts for carbon and nitrogen generally reflect local bonding interactions, often in ways that allow the local structure to be inferred. The anisotropy of the shielding tensor is also of interest. It influences the resonance position in partially-ordered samples and has consequences for spin relaxation, even in isotropic systems. There has been recent progress in measuring and interpreting these anisotropies.

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Year:  1998        PMID: 9818268     DOI: 10.1016/s0959-440x(98)80155-3

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  31 in total

1.  Alignment of weakly interacting molecules to protein surfaces using simulations of chemical shift perturbations.

Authors:  M A McCoy; D F Wyss
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

2.  The use of chemical shift temperature gradients to establish the paramagnetic susceptibility tensor orientation: implication for structure determination/refinement in paramagnetic metalloproteins.

Authors:  Z Xia; B D Nguyen; G N La Mar
Journal:  J Biomol NMR       Date:  2000-06       Impact factor: 2.835

3.  Modeling of the structural features of integral-membrane proteins reverse-environment prediction of integral membrane protein structure (REPIMPS).

Authors:  S Dastmalchi; M B Morris; W B Church
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

4.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

5.  An evaluation of chemical shift index-based secondary structure determination in proteins: influence of random coil chemical shifts.

Authors:  S P Mielke; V V Krishnan
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

Review 6.  Quantum chemical studies of protein structure.

Authors:  Eric Oldfield
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-06-29       Impact factor: 6.237

7.  Recoupling of chemical shift anisotropy by R-symmetry sequences in magic angle spinning NMR spectroscopy.

Authors:  Guangjin Hou; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  J Chem Phys       Date:  2012-10-07       Impact factor: 3.488

8.  A Magic-Angle Spinning NMR Method for the Site-Specific Measurement of Proton Chemical-Shift Anisotropy in Biological and Organic Solids.

Authors:  Guangjin Hou; Rupal Gupta; Tatyana Polenova; Alexander J Vega
Journal:  Isr J Chem       Date:  2014-02-01       Impact factor: 3.333

9.  Application of the random coil index to studying protein flexibility.

Authors:  Mark V Berjanskii; David S Wishart
Journal:  J Biomol NMR       Date:  2007-11-06       Impact factor: 2.835

Review 10.  Chemical shifts in biomolecules.

Authors:  David A Case
Journal:  Curr Opin Struct Biol       Date:  2013-02-17       Impact factor: 6.809

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